BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0172.0009.p
         (222 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312623|ref|YP_003776715.1| chaperone activity ATPase [Herb...    75   4e-15

>gi|300312623|ref|YP_003776715.1| chaperone activity ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 349

 Score = 75.5 bits (184), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 88/182 (48%), Gaps = 27/182 (14%)

Query: 10  ITLDPSGKTFAA-GDELLLDAALAQGVSIPFSCRRGECGSCKVRVLVGRHETEPYVALGT 68
           +T+ PSG+ F    DE +L AA+  GV +P+ C+ G C SCK +++ G+ E  P+     
Sbjct: 5   VTVQPSGRQFTCDADESILTAAIRAGVGLPYGCKNGACSSCKGKLVSGQVEHGPHQERAL 64

Query: 69  PYPLAHDEM----LLCRNRACSDMRI---------DIPGWSPEAQASRFEAQVLEKRLLT 115
               AH++     L C  +  SD+ I         DIP         +   +V +   + 
Sbjct: 65  S---AHEQQLGMALFCVAKPQSDVTIEAREVAGAGDIP-------VRKLPVRVAKLDKVA 114

Query: 116 PNVVRLVLQGAAA--MPIRAGQYVKVYLDDGSSRCFSVANIPADDGGKLVFHIRRVAGGR 173
            +V+ L LQ  A   +  +AGQYV+  L DG  R +S+A  P  D   +  HIR + GG 
Sbjct: 115 DDVIVLSLQLPANDRLQYKAGQYVEFLLRDGKRRSYSMATAPHKD-EHMSLHIRHLPGGL 173

Query: 174 FS 175
           F+
Sbjct: 174 FT 175


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.139    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 556,528
Number of extensions: 18566
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 140
Effective length of database: 1,231,600
Effective search space: 172424000
Effective search space used: 172424000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)