BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0172.0008.p
         (175 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311757|ref|YP_003775849.1| transcription regulator protein...    59   2e-10

>gi|300311757|ref|YP_003775849.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 441

 Score = 59.3 bits (142), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 49/93 (52%)

Query: 43  ANICLTQGTQMALHLAAGALIRPGDVVLVERLSYPPAWAIFRALGAQIEVIDVDCDGCRV 102
           A +    G Q AL     +  RPG+V+L E L+YP    +   LG ++  +DVD +G R 
Sbjct: 132 ARVLACPGAQSALAALVLSQTRPGEVILAEPLAYPGLLTVAAHLGRRVMAVDVDDEGMRP 191

Query: 103 DQIEALCSKKTVRLIYLTPHHQFPTTVSLRADR 135
           D +  +  +   RL+YL P  Q PTT ++ A R
Sbjct: 192 DLLMTMARRHQARLVYLNPTLQNPTTRTMPATR 224


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 492,197
Number of extensions: 17347
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 96
Effective length of database: 1,245,805
Effective search space: 119597280
Effective search space used: 119597280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)