BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0172.0007.p
         (266 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312887|ref|YP_003776979.1| oxacillin hydrolase (class-D be...   281   3e-77

>gi|300312887|ref|YP_003776979.1| oxacillin hydrolase (class-D
           beta-lactamase) signal peptide protein [Herbaspirillum
           seropedicae SmR1]
          Length = 272

 Score =  281 bits (720), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 135/263 (51%), Positives = 175/263 (66%), Gaps = 3/263 (1%)

Query: 4   LIAALFAIGASLFVSETEARTLCTLIVDPASGKALVREGDCATRVTPASTFKIPIALMGY 63
           + AAL A G  +  +   ART+CT++ D +   ++V+ GDC +R TPASTFKI I+LMG+
Sbjct: 6   MFAALIAGG--IISTAASARTICTIVADASENGSIVQSGDCTSRFTPASTFKIAISLMGF 63

Query: 64  DAGFLKDEHAPAIPFREGYTYWGNPAWRDTIDPAAWIKYSVVWYSQQVTHALGAAKFKAY 123
           DAG L+DEH PA P++  Y  WG  AWR   D + WI+YSVVW+SQ+V   LGA +F+ Y
Sbjct: 64  DAGVLQDEHTPAWPYQPEYPDWGGAAWRQPTDASRWIQYSVVWFSQRVAQQLGATRFQRY 123

Query: 124 VDKFSYGNRDVHGDKDKNNALDRAWISSSIRISPDEQAQFLSKLVNRSLPVSVHAMEMTS 183
              F YGN+DV G+  K N    AWI+SS+RISP EQ  FL +LVNR LPV+  A EMT 
Sbjct: 124 TRDFRYGNQDVSGEPGKRNGTKGAWINSSLRISPLEQIAFLRRLVNRQLPVNARAYEMTG 183

Query: 184 RITLMPPLADGWELHGKTGAAMPRTPDGGYDKAHFYGWFIGWVTKDAKTRVIVRLAQEEK 243
           RIT +    DGWE+HGKTG   P + DG YD AH YGWF+GW  KD +  V  RL Q+++
Sbjct: 184 RITRITAAPDGWEIHGKTGTGSPGS-DGRYDPAHAYGWFVGWAIKDDRKLVFARLIQDDR 242

Query: 244 EEKISAGVRARDAFLAELPGLLD 266
             + +AG+RARD  L +LP L D
Sbjct: 243 PTQPNAGLRARDGLLDDLPALTD 265


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 923,063
Number of extensions: 39043
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 182
Effective length of database: 1,222,130
Effective search space: 222427660
Effective search space used: 222427660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)