BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0172.0006.p
         (130 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311548|ref|YP_003775640.1| hypothetical protein Hsero_2233...   119   7e-29

>gi|300311548|ref|YP_003775640.1| hypothetical protein Hsero_2233
           [Herbaspirillum seropedicae SmR1]
          Length = 175

 Score =  119 bits (298), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 75/166 (45%), Positives = 95/166 (57%), Gaps = 43/166 (25%)

Query: 7   KAAAALVSVGT---ALLAGCSAQKPDTQANRDATAKEIIEQVKTTPDGTSTADSLDAYKE 63
           K A  L++ G    ALLA CS+ +  ++ +RDA A+++IEQ KTT DGTSTA ++D YK 
Sbjct: 11  KGARRLLASGIGVAALLAACSSPES-SKEDRDALARQLIEQKKTTSDGTSTATTVDGYKV 69

Query: 64  DLARRISQVNSLKVHVERPQALLRSVINV------------------------------- 92
           DLA+RISQVN   V+VERPQALLRSVI +                               
Sbjct: 70  DLAKRISQVNFTSVYVERPQALLRSVIVIKYVVDADGNLVTSEILRSNRDRHAEASAMGS 129

Query: 93  --------SPGAALLSGGRVELSETWLFNNNGRFQLRTIAQPQKNE 130
                    P AALL   R+ELSE+WLFNN+GRFQLR++A  Q  E
Sbjct: 130 LKSAAPFPKPPAALLKHNRIELSESWLFNNDGRFQLRSVALAQMGE 175


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.310    0.124    0.334 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 374,349
Number of extensions: 12670
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 2
Length of query: 130
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 55
Effective length of database: 1,264,745
Effective search space: 69560975
Effective search space used: 69560975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 125 (52.8 bits)