BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0171.0001.p
         (157 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311805|ref|YP_003775897.1| two component hybrid sensor his...    73   1e-14

>gi|300311805|ref|YP_003775897.1| two component hybrid sensor
           histidine kinase/response regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 1278

 Score = 73.2 bits (178), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 3/106 (2%)

Query: 35  LLDSTGEGIYGIDLDGRCTFINRAGAEMLGYPIGQ-VLGKNMHELVHHSHEHGAHYPEEE 93
           LLDST +G + ID  G  T  N A  ++LGY   + VLG+ +H+++    E         
Sbjct: 446 LLDSTDQGFFSIDSAGIITLCNAAFLQLLGYAAEKDVLGRPIHDVILQPSEETQS--RTG 503

Query: 94  CPILKAFRKGESCRVDQEVFWRADGTHFATEYSSYQIIDGGQVRGA 139
           C +L+A R+G S  VD E F R DGT F  +Y ++ +   GQ++GA
Sbjct: 504 CAVLRAAREGVSAHVDSENFLRVDGTSFPVQYQTHPVWQDGQLQGA 549


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 453,648
Number of extensions: 17103
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 1
Length of query: 157
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,250,540
Effective search space: 98792660
Effective search space used: 98792660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)