BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0170.0018.p
         (303 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313473|ref|YP_003777565.1| transcription accessory protein...   273   1e-74

>gi|300313473|ref|YP_003777565.1| transcription accessory protein
           [Herbaspirillum seropedicae SmR1]
          Length = 783

 Score =  273 bits (699), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 138/148 (93%), Positives = 141/148 (95%)

Query: 1   MLPSIEQRLALELVAKPVQVAAAIALLDEGATVPFIARYRKEATGGLDDTQLRLLEERLR 60
           MLPSIEQRLALEL AKPVQVAAAIALLDEGATVPFIARYRKE TGGLDD QLRLLEERLR
Sbjct: 1   MLPSIEQRLALELAAKPVQVAAAIALLDEGATVPFIARYRKEVTGGLDDVQLRLLEERLR 60

Query: 61  YLRELEDRRAAIISSIEEQGKMTPVLLDAIVHAEDKTRLEDLYLPYKLKRRTKAQIAAEA 120
           YLRELE RRAAII+SIEEQGKMTPVLLDAI HAEDKTRLEDLYLPYK KRRTKAQIAAEA
Sbjct: 61  YLRELESRRAAIIASIEEQGKMTPVLLDAITHAEDKTRLEDLYLPYKPKRRTKAQIAAEA 120

Query: 121 GLTELADALLNDPMLNPEEEAAKYLKPA 148
           GLTELADALLNDP LNPEEEAAK++KPA
Sbjct: 121 GLTELADALLNDPTLNPEEEAAKFIKPA 148


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 855,775
Number of extensions: 32734
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 218
Effective length of database: 1,217,395
Effective search space: 265392110
Effective search space used: 265392110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)