BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0170.0016.p
         (239 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313472|ref|YP_003777564.1| hypothetical protein Hsero_4186...   206   1e-54

>gi|300313472|ref|YP_003777564.1| hypothetical protein Hsero_4186
           [Herbaspirillum seropedicae SmR1]
          Length = 247

 Score =  206 bits (525), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 152/224 (67%), Gaps = 25/224 (11%)

Query: 16  ASQPATTDDTTKADSAGGTQETKLTPAIAKQQLNAAILQSSLEVSLSSQNDPLSLVYKSA 75
           A+ PA +D   +A  A       LT A AK Q N +I+Q+SLEVSL +QNDPLSLVYK+A
Sbjct: 38  AASPAVSDKIAEAKKAN-----LLTEAGAKAQFNLSIVQASLEVSLQTQNDPLSLVYKTA 92

Query: 76  IENLNDILKPELGDNAIQNAASQDNSPEATAGRILSFIKSAFGLFSQNTQTGSTDGTDGA 135
           IEN+ND+L+P+LGDNAIQN ASQDN+PEATAGRI+SFI + F LF +N    + D  D  
Sbjct: 93  IENINDVLRPQLGDNAIQNTASQDNTPEATAGRIVSFITNMFDLFKKN----NPDKDDS- 147

Query: 136 DGGGMXKRDANIDKFMSLIQKGVDQGFDEARGILSSLKVLNGDIASNIDKTYEILKKGIA 195
                    +NID +M LI KGVDQGF EARGIL SL VL GDIA NIDKTY++++K + 
Sbjct: 148 ---------SNIDDYMKLIFKGVDQGFKEARGILESLSVLQGDIADNIDKTYDLVQKSLN 198

Query: 196 DFVASLK--NPTTDDGSAPADGSSSTT----TSVSVSVSITASR 233
           DF+  +K   P T++G    DG   T     T+VS+S+S++ +R
Sbjct: 199 DFINKVKGAKPDTEEGQGQNDGQGGTVVASETTVSISISVSQTR 242


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.305    0.121    0.315 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 358,545
Number of extensions: 9849
Number of successful extensions: 26
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 157
Effective length of database: 1,231,600
Effective search space: 193361200
Effective search space used: 193361200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 129 (54.3 bits)