BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0170.0015.p (367 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312847|ref|YP_003776939.1| branched-chain amino acid ABC t... 264 1e-71 gi|300312761|ref|YP_003776853.1| branched-chain amino acid ABC t... 59 7e-10 gi|300311772|ref|YP_003775864.1| branched-chain amino acid ABC t... 58 1e-09 gi|300312236|ref|YP_003776328.1| amino acid ABC transporter peri... 56 5e-09 >gi|300312847|ref|YP_003776939.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 383 Score = 264 bits (674), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 148/350 (42%), Positives = 206/350 (58%), Gaps = 5/350 (1%) Query: 18 SSNDIVVGQSADLSGPYAKITRQFITGANVYFAQLNSRGGIGGRRIRLLTLDDQNDPVQA 77 S+ ++V+GQSA SGP + + R F+ GA YFA +N++GG+ GRR+RLL+LDD +P + Sbjct: 31 SATEVVLGQSAPFSGPASDLGRDFLVGAQSYFAMVNAKGGVHGRRVRLLSLDDGYEPERT 90 Query: 78 VRNTHQLLDEHKAIALFGYIGAQTTAAVLPLLNERKVPYFAPVTGSRIVYTAFNRHVFTI 137 NT QL+ K ALFGY G TT A LP + E VP FAPV+G+ + FNR +F + Sbjct: 91 AANTQQLIWRDKVFALFGYSGTATTLAALPAIREANVPLFAPVSGALALREPFNRLIFHV 150 Query: 138 RASYANEYDYLFSRFSQIGLKRMAIF--NDATGQPYNAMMKGKISDASAQLVALESIL-- 193 RASYA E D+L + G +++A+F ND G+ ++ + LV ++ Sbjct: 151 RASYAQETDFLLRQLQGTGRRKVAVFYQNDELGKSMLEQLRLRALVYGLTLVGTAAVERN 210 Query: 194 GQDVEKIADKLLASRPDVVLIMSISQNVNSALIRSLRTKGYLGYFYCASLVCSPLLTSDL 253 VE A LL +PDVV I +S +ALI +R GYLG F S V S L++ L Sbjct: 211 SDAVEGAAQALLKVKPDVV-IQVVSYRPAAALIARMRQAGYLGGFSHYSFVGSLSLSARL 269 Query: 254 EEAASGLIISQIVPHPWKARTPIVHEYQKAMRTARVTQFSYLGLEGYIAAKVLAEGLSRA 313 +E G I+Q+VP P KAR P+V+EY+KA+ ++L LEGYIAA+ L EGL RA Sbjct: 270 KECGIGAEIAQVVPFPNKARLPLVYEYRKAVAQHPGAVDNFLSLEGYIAARTLVEGLRRA 329 Query: 314 SSKLTHEKLIVALETVNDKTYDNAGYQINFSPSSHQGSTYVDVVTVDRTG 363 LT E LI ALET++ YD G+ +FS + H GS +VD+ + G Sbjct: 330 GRALTREGLIRALETISPANYDGGGFSQHFSRTDHSGSDFVDLTAIGSGG 379 >gi|300312761|ref|YP_003776853.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 380 Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 58/236 (24%), Positives = 107/236 (45%), Gaps = 17/236 (7%) Query: 30 LSGPYAKITRQFITGANVYFAQLNSRG-GIGGRRIR--LLTLDDQNDPVQAVRNTHQLLD 86 LSGP A + + GA + +LN++G IGG++++ L+ DD +DP QA +L+D Sbjct: 36 LSGPNAHMGKDNENGARMAVDELNAKGFTIGGKKVKFELVGEDDASDPKQATAVATKLVD 95 Query: 87 EHKAIALFGYIGAQTTAAVLPLLNERKVPYFAP-VTGSRIVYTAFNRHVFTIRASYANEY 145 + K A+ G++ + TT + ++ +P +P T + F + F + A+ A + Sbjct: 96 Q-KVAAVIGHLNSGTTIPASKIYSDAGIPQVSPSATNPKYTQQGF-KTAFRVVANDA-QL 152 Query: 146 DYLFSRFS--QIGLKRMAIFNDAT--GQPYNAMMKGKISDASAQLVALE--SILGQDVEK 199 +++ ++G K++A+ +D T GQ A +V + + D Sbjct: 153 GAALGKYAVQKLGTKQIAVIDDRTAYGQGVADEFAKGAKAAGGTIVGTQYTNDKATDFNA 212 Query: 200 IADKLLASRPDVVLIMSISQNVNSALIRSLRTKGYLGYFYCASLVCS---PLLTSD 252 I L +PDVV + V ++R ++ G F +C+ P L D Sbjct: 213 ILTSLKGKKPDVVFFGGMDA-VGGPMLRQMKQLGISAKFMGGDGICTGSLPGLAGD 267 >gi|300311772|ref|YP_003775864.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 404 Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 77/320 (24%), Positives = 140/320 (43%), Gaps = 22/320 (6%) Query: 44 GANVYFAQLNSRGGIGGRRIRLLTLDDQNDPVQAVRNTHQLLDEHKAIALFGYIGAQTTA 103 G + ++N+ GG+ G+++ ++ DD +P +VR +L+ + LFG + T Sbjct: 53 GWEMALDEINASGGVLGKKLEVIARDDNGNPGDSVRVAEELMARERVALLFGGFLSNTGL 112 Query: 104 AVLPLLNERKVPYFA--PVTGSRIVYTAFNRHVFTIRASYANEYDYLFSRFSQIGLKRMA 161 A+ + +V + A P+T +IV+ N++ + +R S + + ++ KR A Sbjct: 113 ALTDYAKQHRVFFLAAEPLT-DKIVWQNGNKYTYRLRPSTSMLVASVVKEAVKLKKKRWA 171 Query: 162 IF--NDATGQPYNAMMKGKISDA--SAQLVALES-ILGQ-DVEKIADKLLASRPDVVLIM 215 I N GQ A K + A + VA ++ LG+ D + L ++PD + Sbjct: 172 IVYPNYEYGQSAVASFKTLMKQAQPDVEFVAEQAPPLGKIDAGAVTQALADAKPDAIFNA 231 Query: 216 SISQNVNSALIRSLRTKGYLGYFYCASLVC-SPLLTSDLE-EAASGLIISQIVPHPWKA- 272 + ++ +R T+G SL+ P L+ EA I++ +PW A Sbjct: 232 LFAADLGK-FVREGNTRGLFEQVDVVSLLTGEPEYLDPLKGEAPQNWIVTG---YPWYAI 287 Query: 273 RTPIVHEYQKAMRTARVTQFSYLG-LEGYIAAKVLAEGLSRASSKLTHEKLIVALETVND 331 TP ++ +A R + + G L GY A +A GL +A S ++L A + Sbjct: 288 HTPEHKKFVEAYRK-KFNDYPRNGSLVGYSALMSIAAGLRKAGST-DADRLAAAFSGLKV 345 Query: 332 KTYDNAGYQINFSPSSHQGS 351 +T I + P HQ + Sbjct: 346 ET---PVASIVYRPQDHQST 362 >gi|300312236|ref|YP_003776328.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 385 Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 68/301 (22%), Positives = 129/301 (42%), Gaps = 20/301 (6%) Query: 21 DIVVGQSADLSGPYAKITRQFITGANVYFAQLNSRGGIGGRRIRLLTLDDQNDPVQAVRN 80 DI +G + L+GP AK G + ++N++GG+ G ++ L+ D+Q +A+ Sbjct: 27 DIKLGVAEALTGPAAKYGVAIKNGFTLASEEINAKGGVNGDKLALVIEDEQGKKEEAINV 86 Query: 81 THQLLDEHKAIALFGYIGAQTTAAVLPLLNERKVPYFAPVTGSRIVYTAFNRHVFTIRAS 140 +L+ + K +A+FG + + A P+ N KV F + + TA FT R S Sbjct: 87 FKKLIFQDKVLAVFGPTLSNSAFAADPIANAAKVVVFG-TSNTADGITAMGP--FTFRNS 143 Query: 141 YANEYDYL----FSRFSQIGLKRMAIF---NDATGQPYNAMMKGKISDASAQLVALESIL 193 E D L + G+K++A+ +DA + + K + + E+ Sbjct: 144 VM-EADVLPVTVKAAVKHFGIKKVAVIYGNDDAFTKSGYDVFKATLEHQKIPVTTTEAYA 202 Query: 194 GQDVEKIAD--KLLASRPDVVLIMSISQNVNSALIRSLRTKGYLGYFYCASLVCSPLLTS 251 DV+ A K+ A PD ++ +++ + ++++ R G F + + SP L Sbjct: 203 KGDVDFKAQLTKIKAGNPDAIVCSCLAEEAANIILQT-RALGMKQPFIGGNGLNSPKLFE 261 Query: 252 DLEEAASGLIISQIVPHPWKA--RTPIVHEYQKAMRTARVTQFSYLGLEGYIAAKVLAEG 309 ++A ++ PW A +TP + A + + Y A ++A+ Sbjct: 262 IAKDAGDNTLMG----SPWSAENQTPANKAFITAYKAKFGADPDQFAAQAYDAMYIVADA 317 Query: 310 L 310 L Sbjct: 318 L 318 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 964,708 Number of extensions: 35214 Number of successful extensions: 141 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 144 Number of HSP's successfully gapped: 6 Length of query: 367 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 280 Effective length of database: 1,207,925 Effective search space: 338219000 Effective search space used: 338219000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)