BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0170.0014.p
         (793 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313470|ref|YP_003777562.1| bifunctional 3-dehydroquinate s...   661   0.0  
gi|300313471|ref|YP_003777563.1| deoxyguanosinetriphosphate trip...   603   e-173

>gi|300313470|ref|YP_003777562.1| bifunctional 3-dehydroquinate
           synthase/shikimate kinase [Herbaspirillum seropedicae
           SmR1]
          Length = 596

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/483 (70%), Positives = 370/483 (76%), Gaps = 53/483 (10%)

Query: 1   VIYLRAGINQILQRTGRDKNRPLLQTADPRRKLEELSRQRDPFYREVADFVIETGRPNVQ 60
           V+YLRA INQILQRTGRDKNRPLLQTADPRRKLEELSRQRDP YR+VADFVIET RPNVQ
Sbjct: 98  VVYLRASINQILQRTGRDKNRPLLQTADPRRKLEELSRQRDPLYRDVADFVIETNRPNVQ 157

Query: 61  FLVQAPFFFFFFYKPTRQSPXQGLELAPKQIT------------DTAVAPATSHA----Q 104
           FLVQ          P  +S  Q    A + I             D AV  +TSH      
Sbjct: 158 FLVQTIISHLELSPP--ESSWQSAPAADETIVIERSSALVTSAADGAVVVSTSHTSQTFH 215

Query: 105 SAQSADPAKSAM---TASTFAPIALQVELGERSYPITIGHDLLSNPELLTRHVGGKRVAV 161
            A SA+P  + M   TAS  API L V+LGERSYPI IG  LL +  LL ++V GKRVA+
Sbjct: 216 GAASAEPTLARMNQNTASAPAPITLNVDLGERSYPIHIGRGLLDDAGLLPQYVKGKRVAI 275

Query: 162 VTNDKVGPLYLPRVR--------------------------------KLLEDAXDRKTTL 189
           VTNDKVGPLYL +V                                 +LL D  DRKTTL
Sbjct: 276 VTNDKVGPLYLDKVAQPLRAAGKLVTEIVLPDGEEEKNWASLMKIFDRLLADKCDRKTTL 335

Query: 190 VALGGGVIGDLTGYAAASYMRGVPFVQIPTTLLSQVDSSVGGKTGINHPLGKNMIGAFYQ 249
           +ALGGGVIGDLTG+AAASYMRGVPFVQ+PTTLLSQVDSSVGGKTGINHPLGKNMIGAFYQ
Sbjct: 336 IALGGGVIGDLTGFAAASYMRGVPFVQVPTTLLSQVDSSVGGKTGINHPLGKNMIGAFYQ 395

Query: 250 PQAVIADTATLHTLPPRELAAGLAEVIKHGAIIDAPFFDWIEANIGKLVAKDNAALAYSI 309
           PQAVIADTATLHTLPPREL+AG+AEVIKHGAIIDAPFFDWIE NI +LV+KD+AALAY+I
Sbjct: 396 PQAVIADTATLHTLPPRELSAGIAEVIKHGAIIDAPFFDWIETNIAQLVSKDDAALAYAI 455

Query: 310 QRSCEIKADVVRQDEREGGLRAILNFGHTFGHAIENGLGYGQWLHGEAVGCGMVMAADLS 369
           QRSCEIKA+VVRQDEREGGLRAILNFGHTFGHAIENGLGYGQWLHGEAVGCGMVMAADLS
Sbjct: 456 QRSCEIKAEVVRQDEREGGLRAILNFGHTFGHAIENGLGYGQWLHGEAVGCGMVMAADLS 515

Query: 370 HRLGYIDAASKDRLTALVKAAGLPVVAPDLGAERWLELMEVDKKNEGGAIKFILIKPLGQ 429
           HRLGYIDA ++DR+ AL  AAGLP VAPDLG  RWLELMEVDKKNEGG IKFILI+PLG 
Sbjct: 516 HRLGYIDAGARDRVRALTAAAGLPTVAPDLGVARWLELMEVDKKNEGGQIKFILIRPLGS 575

Query: 430 PLI 432
           PLI
Sbjct: 576 PLI 578


>gi|300313471|ref|YP_003777563.1| deoxyguanosinetriphosphate
           triphosphohydrolase [Herbaspirillum seropedicae SmR1]
          Length = 383

 Score =  603 bits (1556), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 293/355 (82%), Positives = 320/355 (90%), Gaps = 2/355 (0%)

Query: 439 PGSRTEYQRDRDRIIHSTAFRRLEYKTQVFVNHEGDLFRTRLTHSIEVAQIARSCARNLR 498
           PGSR+E+QRDRDRI+HSTAFRRLEYKTQVFVNHEGDLFRTRLTHSIEVAQIARSCARNL+
Sbjct: 29  PGSRSEFQRDRDRIVHSTAFRRLEYKTQVFVNHEGDLFRTRLTHSIEVAQIARSCARNLQ 88

Query: 499 LNEDLVEAISLAHDLGHTPFGHAGQDELNSCMKDFGGFEHNLQSLRVVDDLEQHYGAFDG 558
           LNEDLVEAISLAHDLGHTPFGHAGQDELN CMK  GGFEHNLQSLRVVD+LEQHYGAFDG
Sbjct: 89  LNEDLVEAISLAHDLGHTPFGHAGQDELNHCMKHHGGFEHNLQSLRVVDELEQHYGAFDG 148

Query: 559 LNLMFETREGILKHCSLTNARQLGAIGQRFIDKKQPSLEAQLANLADEIAYNNHDIDDGL 618
           LNL FETREGILKHCSL NARQLG IG RF++KKQPSLEAQLANLADEIAYNNHDIDDGL
Sbjct: 149 LNLSFETREGILKHCSLHNARQLGEIGLRFLEKKQPSLEAQLANLADEIAYNNHDIDDGL 208

Query: 619 RSGLLTIGQLGEVDFFARHQREAELAYPGITGRRAINETVRRMINTLIVDLIRTSQENIA 678
           RSGLLT+  + EVDFFARH RE E AYPGITGRR I+ETVRRMIN LIVDLI+TS+  IA
Sbjct: 209 RSGLLTMELMSEVDFFARHLREVEQAYPGITGRRVIHETVRRMINALIVDLIQTSRSRIA 268

Query: 679 AAAPRSIDDVRNAAPLIAFSEPMQQEAAVLKRFLRQNLYRHYQVNRMTAKARRIIAELFQ 738
             APR I+DVRNA  LIAFS+PM  EAAVLK+FLR+ LYRHYQVNRMTAKARRIIAE+F+
Sbjct: 269 EIAPRDIEDVRNAPQLIAFSDPMAAEAAVLKKFLREKLYRHYQVNRMTAKARRIIAEMFE 328

Query: 739 AFLSQPTLLPPDYVVAEQNDEGVR--RQARQVSDYIAGMTDRYAMREHRRLFMVE 791
           AF+ QP LLPPDY V    D+ +R  +QAR+V+DYIAGMTDRYA+REHRRLF++E
Sbjct: 329 AFVGQPNLLPPDYQVHGIVDDALRSDKQARKVADYIAGMTDRYAIREHRRLFVME 383


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,454,848
Number of extensions: 105462
Number of successful extensions: 344
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 342
Number of HSP's successfully gapped: 3
Length of query: 793
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 700
Effective length of database: 1,179,515
Effective search space: 825660500
Effective search space used: 825660500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 134 (56.2 bits)