BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0170.0013.p (696 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313469|ref|YP_003777561.1| fimbrial type-4 assembly signal... 670 0.0 gi|300310140|ref|YP_003774232.1| type II/III HrcC transmembrane ... 78 2e-15 >gi|300313469|ref|YP_003777561.1| fimbrial type-4 assembly signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 674 Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/653 (55%), Positives = 471/653 (72%), Gaps = 10/653 (1%) Query: 31 AVDVAQRDSSVEVRIRL-RMAPATPPVHFSTVSPARIVIDLADTENTADARPPGADTGAL 89 A+D+ RD + + +RL + P + HF + P ++V+DL DT A A +G L Sbjct: 25 ALDIEARDEATTLTLRLDQTLPLSQIHHFQLLDPPQLVLDLPDTTLAAGMARQFAASGLL 84 Query: 90 RGVTVASAAGRSRVVLNLRHMPPYSVRTEADTVIATLSGSDVLPVANSRPV-IGGIDFRR 148 + VT+AS R R++ L+ Y ++ + + V LS P+ P +GGI F+R Sbjct: 85 KRVTLASDGERLRLLATLKRPLHYQLQVQDEQVQVALS-----PLPPQAPTALGGIGFQR 139 Query: 149 GSQGEGRIIVDLPGPETALDIRQQGRQIVADILNTGVPEHSPRRLDVSDFGTPVKTIASS 208 GS GEGR+ +DL + +RQQG++++ DI T +P S R+++V DF TPV + Sbjct: 140 GSAGEGRLDIDLGSTAPVVQVRQQGQRLIVDIGGTTLPTGSARQVEVGDFATPVTQYQAY 199 Query: 209 SHGADVRLLIDTETLAEYHAHQKDAQLVIEVRTPTETGKGPAQRHQPYRGDKLSLQFQNI 268 + VRL I + L Y A Q+ QL I+V P + Y+G +LSL FQNI Sbjct: 200 PYENGVRLAIHAQGLWRYQAVQRGQQLRIDV-LPVSADPHRIAPDKDYQGARLSLNFQNI 258 Query: 269 EVRAILQVLADFTGINIIASDGVGGALTLRLKEVPWDQALDIVLQARGLDMRRNGNVMWV 328 EVR LQVLADFTG+NIIASD V G L+LRLK+VPW+QAL+++LQARGL ++R+G V+W+ Sbjct: 259 EVRTALQVLADFTGLNIIASDAVTGQLSLRLKDVPWEQALEMILQARGLALQRSGGVLWI 318 Query: 329 APREELLARERLELEQRAQIAELEPLRAEVFQLNYQKAEAFRKVFGEDVAAGISPNSDRR 388 APREE+ ARER ELEQ+A +A+LEPL AE FQLNYQ+A+ R+ G + +P ++RR Sbjct: 319 APREEMAARERQELEQKALLADLEPLHAETFQLNYQRADNLRRALG--LGEDGTPQANRR 376 Query: 389 PALLSRRGSAVVDQRTNQLFVTDTPSVLDNIRKLLEKIDVASRQVLIEARIVEADDSFSR 448 +LLSRRGSA++D TNQL VTDT + L N+RKL+E+ID+A+RQV+IEARIVEADDSF+R Sbjct: 377 ASLLSRRGSAMIDSHTNQLLVTDTLAALANVRKLIERIDIAARQVMIEARIVEADDSFAR 436 Query: 449 NLGARLGFSAKANGVAAGSTYNQVGEVAGLTKAAANSYTANHAVNLPAQGIGGAAAGNVA 508 NLG +LG +A+ G A G++Y VGE++G T AA +Y A+ L A + G+A G+ A Sbjct: 437 NLGVKLGLAARTQGAALGNSYASVGELSGQTPPAAGTYLREPALGLGAGALAGSAPGSFA 496 Query: 509 LSLFNAAANRFLTLELSALEADGKGKIVSSPRVVTADQQPALIEQGEEIPYQQATSSGAT 568 +LFNAAA RFL +ELSALEA+G+GKIVSSPR+VTADQQ ALIEQGEEIPYQQ+ SGAT Sbjct: 497 FTLFNAAAQRFLNVELSALEAEGRGKIVSSPRLVTADQQAALIEQGEEIPYQQSIGSGAT 556 Query: 569 STAFKKANLKLEVTPQITPDGNVILNVDINKDSRGTATPGGLAINTKHVRTLVQVENGGT 628 +TAFKKANLKLEVTPQITPDGNVIL+VD+NKDSRG+ATPGGLAINTKH++T VQVE+GGT Sbjct: 557 ATAFKKANLKLEVTPQITPDGNVILDVDVNKDSRGSATPGGLAINTKHIKTKVQVEDGGT 616 Query: 629 VVIGGIYTQTESNTVSKVPLLGDIPLLGNLFRHSARIDHKTELLIFLTPKIVA 681 VVIGGIYTQT++ ++VPLLG+IPLLG LFR ++ KTELLIFLTP+IVA Sbjct: 617 VVIGGIYTQTDNEHETRVPLLGEIPLLGALFRSRNKVRDKTELLIFLTPRIVA 669 >gi|300310140|ref|YP_003774232.1| type II/III HrcC transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 693 Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 78/298 (26%), Positives = 125/298 (41%), Gaps = 46/298 (15%) Query: 401 DQRTNQLFVTDTPSVLDNIRKLLEKIDVASRQVLIEARIVEADDSFSRNLGARLGFSAKA 460 D N + + D + D L+ ++DV +QV IEA IV+ D S +G G A Sbjct: 307 DSSLNAIMIYDDIAKRDMYAALINQLDVKPQQVEIEALIVDIDRSRLAEMGVEWGARAGV 366 Query: 461 NGVAAGSTYNQVGEVAGLTKAAANSYTANHAVNLPAQGIGGAAAGNVALSLFNAAANRFL 520 T Q + +LP G +L + A RF Sbjct: 367 VNTTVNGTTTQ-----------------SSGTDLPLPGA----------TLLISDAARFY 399 Query: 521 TLELSALEADGKGKIVSSPRVVTADQQPALIEQGEEIPYQQATSSGATSTAFKKANLKLE 580 L A+E++G+ +++++P V+T D A+++ + Y + A L Sbjct: 400 A-RLKAMESNGEARVLATPTVLTLDNVAAVLDLSQSA-YVSLIGERVADMSDITAGTMLR 457 Query: 581 VTPQITPDGN---VILNVDINKDS-------------RGT-ATPGGLAINTKHVRTLVQV 623 V P+I DG V L VDI S RGT A+ ++ + T + Sbjct: 458 VIPRIIDDGGQTRVRLEVDIEDGSLNNGNNDSGSNSSRGTGASTIAASVTRSTINTQAII 517 Query: 624 ENGGTVVIGGIYTQTESNTVSKVPLLGDIPLLGNLFRHSARIDHKTELLIFLTPKIVA 681 + T++IGG ++ KVPLLGD+P++G LFR +R + E L +TP+I + Sbjct: 518 DAQQTLMIGGYRAESLIRNKQKVPLLGDLPVVGGLFRSESRSNSTRERLFLITPRITS 575 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.132 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,132,432 Number of extensions: 91917 Number of successful extensions: 326 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 322 Number of HSP's successfully gapped: 2 Length of query: 696 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 604 Effective length of database: 1,184,250 Effective search space: 715287000 Effective search space used: 715287000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)