BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0170.0005.p
         (73 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313461|ref|YP_003777553.1| prolin-rich signal peptide prot...    74   2e-15
gi|300313462|ref|YP_003777554.1| hypothetical protein Hsero_4176...    62   9e-12

>gi|300313461|ref|YP_003777553.1| prolin-rich signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 255

 Score = 74.3 bits (181), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 34/53 (64%), Positives = 41/53 (77%), Gaps = 2/53 (3%)

Query: 21  QVWHVVRQPRPGSYEQRLDIWLEPGRQWYPARLRFTE--TNGDYLELSLSGLK 71
           Q WHVVR P+PG+YE R+DIWL P  +WYPARLR+T+   NGD  ELSLS L+
Sbjct: 202 QTWHVVRVPKPGAYEDRIDIWLAPQHEWYPARLRYTDPRPNGDVTELSLSELR 254


>gi|300313462|ref|YP_003777554.1| hypothetical protein Hsero_4176
           [Herbaspirillum seropedicae SmR1]
          Length = 253

 Score = 62.0 bits (149), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 33/48 (68%)

Query: 24  HVVRQPRPGSYEQRLDIWLEPGRQWYPARLRFTETNGDYLELSLSGLK 71
           H+ R P P    Q+LDIWL P  +WYP RL+FT+ +GDY+E +L  LK
Sbjct: 203 HLFRAPPPDDQGQKLDIWLAPKMEWYPVRLKFTDPDGDYIEQTLDSLK 250


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 196,169
Number of extensions: 5517
Number of successful extensions: 23
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 2
Length of query: 73
Length of database: 1,619,870
Length adjustment: 44
Effective length of query: 29
Effective length of database: 1,411,530
Effective search space: 40934370
Effective search space used: 40934370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)