BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0169.0046.p
         (242 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312269|ref|YP_003776361.1| hypothetical protein Hsero_2965...   172   2e-44

>gi|300312269|ref|YP_003776361.1| hypothetical protein Hsero_2965
           [Herbaspirillum seropedicae SmR1]
          Length = 294

 Score =  172 bits (437), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 102/220 (46%), Positives = 150/220 (68%), Gaps = 8/220 (3%)

Query: 23  GKPPFNERYPSGSIRSTDEADKILAEADKERLIIEDQYIAEQRDCYKRFFVTACLDGAKE 82
            + P  +RYP+GSI+S + A  +L E  ++R  ++ +Y+ +QR C  +F V  CL+ A++
Sbjct: 73  ARTPIRQRYPAGSIKSVEMAQAVLDEVAEDRQAVQLRYVLDQRACAPKFLVNKCLEEARD 132

Query: 83  RNRVAGKQVRDVEVEANTYKRQAKADDRDKSLAEQRVKDEQDSARRAADQKERDAAAARK 142
           R R+A K ++  E EAN ++RQA  DDRD+SLA+QR KD++D+ARR A+QK+++A +ARK
Sbjct: 133 RKRLAEKDLKQAEYEANVFQRQANVDDRDRSLADQRAKDQEDAARRQAEQKQKEADSARK 192

Query: 143 VQESAAKQEQVKQR-ELQSEGKEDARVKAHEAQMRQKQAADAAKAPQREANEKAYQEKVK 201
           VQES AK  +V+QR +   +   D RV+ HEA+ RQ++A DAA+AP+R AN    Q +++
Sbjct: 193 VQESNAKNREVQQRIDANKDVPADYRVREHEAKQRQQRAEDAARAPERAANAAERQRRIQ 252

Query: 202 AAEVHRKEVEANKAEKARERAAKQQQ-------APASGPA 234
            AE HR EVE NKAEK RERA +QQ        +P + PA
Sbjct: 253 EAEQHRLEVERNKAEKERERAQRQQNLQNQQQDSPTTAPA 292


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.307    0.122    0.323 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 442,454
Number of extensions: 12107
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 4
Length of query: 242
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,226,865
Effective search space: 195071535
Effective search space used: 195071535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 129 (54.3 bits)