BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0169.0045.p
         (251 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312270|ref|YP_003776362.1| ATPase [Herbaspirillum seropedi...   311   3e-86

>gi|300312270|ref|YP_003776362.1| ATPase [Herbaspirillum seropedicae
           SmR1]
          Length = 365

 Score =  311 bits (797), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 146/161 (90%), Positives = 155/161 (96%)

Query: 1   VAFKSQRSSSFKRLINRPDVPRGVYMWGGVGRGKSFLMDSFYSVVPVVRKTRVHFHEFMR 60
           VA+K+QR+S+FKRLI+RP VPRGVYMWGGVGRGKSFLMDSFYSVVPVVRKTR+HFHEFMR
Sbjct: 37  VAYKAQRASTFKRLISRPAVPRGVYMWGGVGRGKSFLMDSFYSVVPVVRKTRLHFHEFMR 96

Query: 61  DVHRQLDELKGIANPLDEVAKRIAKKYRLICFDEFHVSDIADAMILYNLLSGLFDNGVSF 120
           DVHRQLDELKGIA+PLDEVAKRIAKKYRLICFDEFHVSDIADAMILYNLL GLFD+GVSF
Sbjct: 97  DVHRQLDELKGIADPLDEVAKRIAKKYRLICFDEFHVSDIADAMILYNLLKGLFDHGVSF 156

Query: 121 VMTSNYKPDTLYPDGLHRDRMLPTIQLLNSKLDVMNIDAGI 161
           VMTSNY+P TLYPDGLHRDRMLPTI LL  KLDVMNIDAGI
Sbjct: 157 VMTSNYEPSTLYPDGLHRDRMLPTIALLKEKLDVMNIDAGI 197


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.140    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 765,277
Number of extensions: 30670
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 168
Effective length of database: 1,226,865
Effective search space: 206113320
Effective search space used: 206113320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)