BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0169.0043.p
         (415 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312272|ref|YP_003776364.1| dihydrolipoamide succinyltransf...   729   0.0  
gi|300310786|ref|YP_003774878.1| dihydrolipoamide acetyltransfer...   179   4e-46

>gi|300312272|ref|YP_003776364.1| dihydrolipoamide
           succinyltransferase component of 2-oxoglutarate
           dehydrogenase complex protein [Herbaspirillum
           seropedicae SmR1]
          Length = 413

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/415 (89%), Positives = 395/415 (95%), Gaps = 2/415 (0%)

Query: 1   MAQIEVKVPQLSESVAEATLLQWHKKVGEAVARDENLIDVETDKVVLELPAPEAGVIAQI 60
           MAQIEVKVPQLSESVAEATLLQWHKKVGE V+RDENLID+ETDKVVLELP+P+AGVI QI
Sbjct: 1   MAQIEVKVPQLSESVAEATLLQWHKKVGEPVSRDENLIDIETDKVVLELPSPDAGVITQI 60

Query: 61  IKADGSTVVAGEVIAILDTDASAQVSPLEVKAAPAPQNTNEPTPVAAPELANKSDVAMPA 120
           IKADG+TVVAGEVIAILDTDASAQV+P EVKAAPAPQ TNEPTPVAAPELA+K DVAMPA
Sbjct: 61  IKADGATVVAGEVIAILDTDASAQVAPTEVKAAPAPQATNEPTPVAAPELASKGDVAMPA 120

Query: 121 AAKILADNNMSTSQVSGTGKDGRVTKGDVLASLNAPKAAAPAPAAAKPALQAVAAPGKVN 180
           AAK+LADNN+STSQV+GTGKDGRVTKGDVL +L+AP AA  A A    AL  VAAP K  
Sbjct: 121 AAKLLADNNLSTSQVTGTGKDGRVTKGDVLGALSAPAAAPAAAAKP--ALAQVAAPVKAG 178

Query: 181 LENRPEERVPMSRLRARVAERLLQSQATNAILTTFNEINMQPVLDLRAKYKDKFEKEHGV 240
           LE+RPE+RVPMSRLRARVAERL+QSQ+TNAILTTFNEINMQPV+DLR KYKDKFEKEHGV
Sbjct: 179 LESRPEQRVPMSRLRARVAERLVQSQSTNAILTTFNEINMQPVIDLRNKYKDKFEKEHGV 238

Query: 241 KLGFMSFFVKAVVHALKKYPIVNASVDGNDIVYHGYFDIGVAVGSPRGLVVPVLRDADQL 300
           KLGFMSFFVKAVVHALKKYPIVNASVDGNDIVYHGYFDIGVAVGSPRGLVVP+LRDADQ+
Sbjct: 239 KLGFMSFFVKAVVHALKKYPIVNASVDGNDIVYHGYFDIGVAVGSPRGLVVPILRDADQM 298

Query: 301 SIADIEKKIGEFGQKAKDGKLSIEEMTGGTFTVSNGGTFGSMLSTPIINPPQSAILGIHA 360
           SIADIEKKIGEFGQKAKDGKLSIEE++GGTFTVSNGGTFGSMLSTPIINPPQSAILGIHA
Sbjct: 299 SIADIEKKIGEFGQKAKDGKLSIEELSGGTFTVSNGGTFGSMLSTPIINPPQSAILGIHA 358

Query: 361 TKDRAVVENGQIVIRPMNYFALSYDHRIIDGREAVLSLVAIKEALEDPARLLLDL 415
           TK+RAVVENGQ+V+RP+NYFALSYDHRIIDGREAVLSLVAIKEALEDPARLLLDL
Sbjct: 359 TKERAVVENGQVVVRPINYFALSYDHRIIDGREAVLSLVAIKEALEDPARLLLDL 413


>gi|300310786|ref|YP_003774878.1| dihydrolipoamide acetyltransferase
           component of pyruvate dehydrogenase complex
           [Herbaspirillum seropedicae SmR1]
          Length = 554

 Score =  179 bits (453), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 135/417 (32%), Positives = 212/417 (50%), Gaps = 33/417 (7%)

Query: 4   IEVKVPQLSESVAEATLLQWHKKVGEAVARDENLIDVETDKVVLELPAPEAGVIAQIIKA 63
           +E++VP + +   E  +++   KVG+ V  +++L+ VE+DK  +E+P+  AGVI ++   
Sbjct: 120 VEIEVPDIGD-FKEVEVIEVMVKVGDTVKAEQSLLTVESDKASMEIPSSHAGVIKELKVK 178

Query: 64  DGSTVVAGEVIAILDTDASAQVSPLEVKAAPAPQNTNEPTPV-----------------A 106
            G  V  G +IA ++    A  +      A AP     P P                  +
Sbjct: 179 LGDKVSKGSIIATIEAAGGAPAAAPAAAPAAAPAAAAAPAPASAPAPAAAAAVPAIATAS 238

Query: 107 APELANKSDVAMPAAAKILADNNMSTSQVSGTGKDGRVTKGDVLASLNAPKAAAPAPAAA 166
           A     K+  A P+  K   +  +  S+V  TG  GR+ + DV   +    A + + AA+
Sbjct: 239 ATSTGGKAH-ASPSVRKFARELGVDLSRVPATGPKGRILQLDVQNFVKGVMAGSTSVAAS 297

Query: 167 KPALQAVAAPGKVNLENRPE---------ERVPMSRLRARVAERLLQSQATNAILTTFNE 217
            PA     A   +NL   P          E  P+SR++      L ++      +T F+E
Sbjct: 298 APATNGSGA--GMNLLPWPSLDFSKFGETELQPLSRIKKISGPNLHRNWVMIPHVTQFDE 355

Query: 218 INMQPVLDLRAKYKDKFEKEHG-VKLGFMSFFVKAVVHALKKYPIVNASVD--GNDIVYH 274
            ++  + + R    D F K    VKL  ++F +KA V ALKK+P  N+S+D  G +++  
Sbjct: 356 ADVTELEEFRKTSNDAFAKAKSPVKLTMLAFVIKASVSALKKFPAFNSSLDAKGENLILK 415

Query: 275 GYFDIGVAVGSPRGLVVPVLRDADQLSIADIEKKIGEFGQKAKDGKLSIEEMTGGTFTVS 334
            +++IG A  +P GLVVPV+++ADQ SI  I  ++GE   +A+DGKL   +M G TFT+S
Sbjct: 416 KFYNIGFAADTPNGLVVPVIKNADQKSIGQIAIEMGELSAQARDGKLKPADMQGATFTIS 475

Query: 335 NGGTFGSMLSTPIINPPQSAILGIHATKDRAVVENGQIVIRPMNYFALSYDHRIIDG 391
           + G  G    TPIIN P+ AILG+  +  + V +  Q V R M   +LSYDHR+IDG
Sbjct: 476 SLGGIGGTAFTPIINAPEVAILGLSKSITKPVWDGKQFVPRLMLPTSLSYDHRVIDG 532


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.131    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,223,733
Number of extensions: 51250
Number of successful extensions: 217
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 4
Length of query: 415
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 327
Effective length of database: 1,203,190
Effective search space: 393443130
Effective search space used: 393443130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 132 (55.5 bits)