BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0169.0042.p
         (582 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312273|ref|YP_003776365.1| 2-oxoglutarate dehydrogenase ox...  1149   0.0  

>gi|300312273|ref|YP_003776365.1| 2-oxoglutarate dehydrogenase
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 954

 Score = 1149 bits (2972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/582 (92%), Positives = 568/582 (97%)

Query: 1   VMETLNLAQTRGYGTGGTVHIVINNQIGFTTSDPRDSRSTLYCSDVVKMIEAPVLHVNGD 60
           VMETLNLAQTRGYGTGGTVHIVINNQIGFTTSDPRDSRSTLYCSDVVKMIEAPVLHVNGD
Sbjct: 373 VMETLNLAQTRGYGTGGTVHIVINNQIGFTTSDPRDSRSTLYCSDVVKMIEAPVLHVNGD 432

Query: 61  DPEAVVFATQIAVDYRMQFKKDIVVDIICFRKLGHNEQDTPALTQPLMYKKIAQHPGTRK 120
           DPEAVVFATQIAVDYRM+FKKDIVVDIICFRKLGHNEQDTPALTQPLMYKKIAQHPGTRK
Sbjct: 433 DPEAVVFATQIAVDYRMKFKKDIVVDIICFRKLGHNEQDTPALTQPLMYKKIAQHPGTRK 492

Query: 121 LYAEKLAAQGTIPADGGDVMVKAFRDAMDSGKHTVDPVITNFKSKYAVDWLPFLNRKWTD 180
           LYA+KL  Q TIPADGG+ +VKA+R AMD+GKH +DPV+TNFKSKYAVDWLPFLNRKWTD
Sbjct: 493 LYADKLVTQQTIPADGGEELVKAYRAAMDAGKHAIDPVLTNFKSKYAVDWLPFLNRKWTD 552

Query: 181 AADTAVPLAELKRLATRITTIPEGFKAHALVEKVINDRAAMGRGELNLDWGMGEHLAYAS 240
           AA+TAVP+AELKRLA +ITT+PEGFK H+LVEKV+NDRAAMGRGE+NLDWGMGEHLAYAS
Sbjct: 553 AAETAVPMAELKRLAAKITTVPEGFKVHSLVEKVLNDRAAMGRGEMNLDWGMGEHLAYAS 612

Query: 241 LVASGYAIRLTGQDAGRGTFVHRHAVLHDQNRERWDAGTYIPLQNVAENQAPYTVIDSVL 300
           LV+SGYA+RLTGQDAGRGTF HRHAVLHDQNRERWDAGT+IPLQNVAENQ+ +TVIDSVL
Sbjct: 613 LVSSGYAVRLTGQDAGRGTFTHRHAVLHDQNRERWDAGTFIPLQNVAENQSTFTVIDSVL 672

Query: 301 SEEAVLGFEYGYSTAEPNTLTIWEAQFGDFANGAQVVMDQFISSGEVKWGRASGLVQMLP 360
           SEEAVL FEYGYSTAEPNTLTIWEAQFGDFANGAQVVMDQFISSGEVKWGRASGLVQMLP
Sbjct: 673 SEEAVLAFEYGYSTAEPNTLTIWEAQFGDFANGAQVVMDQFISSGEVKWGRASGLVQMLP 732

Query: 361 HGYEGQGPEHSSARLERYLQLCADNNMQVVQPTTAAQIFHLLRRQMIRLFRKPLIILTPK 420
           HGYEGQGPEHSSAR+ERYLQLCADNNMQVVQPTTAAQIFHLLRRQMIRLFRKPLII+TPK
Sbjct: 733 HGYEGQGPEHSSARIERYLQLCADNNMQVVQPTTAAQIFHLLRRQMIRLFRKPLIIMTPK 792

Query: 421 SLLRNKDAGSPLSDLAKGSFQTVIPELDDKLDAKKVKRIIACSGKVYYDLVNARKERGQT 480
           SLLRNKDAGSPLSDLAKGSFQTVIPE+D+ +DAKKVKRI+ACSGKVYYDLVNARKERGQT
Sbjct: 793 SLLRNKDAGSPLSDLAKGSFQTVIPEVDETIDAKKVKRIVACSGKVYYDLVNARKERGQT 852

Query: 481 DTAIIRVEQLYPFPHKAFAAALKQFPNFQELVWTQDEPQNQGAWLQIQHNIFENLTDGQK 540
           DTAIIRVEQLYPFPHKAFAAALKQFPNF ELVW QDEPQNQGAWLQIQHNIFENL++GQK
Sbjct: 853 DTAIIRVEQLYPFPHKAFAAALKQFPNFNELVWAQDEPQNQGAWLQIQHNIFENLSEGQK 912

Query: 541 LAYAGRPASASPAVGYYDKHYAQQKALIDTAFSKLKGFVLTK 582
           LAYAGRPASASPAVGYYDKHYAQQKALI+TAF+KLKGFVLTK
Sbjct: 913 LAYAGRPASASPAVGYYDKHYAQQKALIETAFAKLKGFVLTK 954


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,910,157
Number of extensions: 82777
Number of successful extensions: 215
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 492
Effective length of database: 1,193,720
Effective search space: 587310240
Effective search space used: 587310240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)