BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0169.0039.p
         (227 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312276|ref|YP_003776368.1| succinate dehydrogenase Fe-S su...   261   5e-71
gi|300312275|ref|YP_003776367.1| hypothetical protein Hsero_2971...   115   4e-27

>gi|300312276|ref|YP_003776368.1| succinate dehydrogenase Fe-S
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 236

 Score =  261 bits (666), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 122/126 (96%), Positives = 125/126 (99%)

Query: 16  EQYDSIKPYLINDSIPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGP 75
           +QYDSIKPYLINDSIPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGP
Sbjct: 111 KQYDSIKPYLINDSIPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGP 170

Query: 76  AGLLQAYRFIADSRDEATGQRLDDLEDPYRLFRCRSIMNCVDVCPKGLNPNKAIGKIKEL 135
           AGLLQAYRFIADSRDEATG RLD+LEDPYRLFRCRSIMNCVDVCPKGLNPNKAIGKIKEL
Sbjct: 171 AGLLQAYRFIADSRDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNKAIGKIKEL 230

Query: 136 MVRRAV 141
           MVRR+V
Sbjct: 231 MVRRSV 236


>gi|300312275|ref|YP_003776367.1| hypothetical protein Hsero_2971
           [Herbaspirillum seropedicae SmR1]
          Length = 94

 Score =  115 bits (287), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 60/67 (89%), Positives = 62/67 (92%)

Query: 161 LLENDLILTRYLDANEESMTDDEVDAFSRLMDLGDNDLMDLLLVRKEPEAAVDLPQVHAL 220
           LLENDLILTRYLDA+E  M+DDEVDAFSRLMDL DNDLMDLLL RKEPEAAVDLPQVHAL
Sbjct: 28  LLENDLILTRYLDAHEAQMSDDEVDAFSRLMDLTDNDLMDLLLARKEPEAAVDLPQVHAL 87

Query: 221 LKKLRNA 227
           LKKLR A
Sbjct: 88  LKKLRTA 94


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.140    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 630,780
Number of extensions: 22931
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 2
Length of query: 227
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 145
Effective length of database: 1,231,600
Effective search space: 178582000
Effective search space used: 178582000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)