BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0169.0038.p
         (491 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312277|ref|YP_003776369.1| succinate dehydrogenase flavopr...   600   e-173
gi|300311535|ref|YP_003775627.1| L-aspartate oxidase [Herbaspiri...   126   4e-30

>gi|300312277|ref|YP_003776369.1| succinate dehydrogenase
           flavoprotein subunit [Herbaspirillum seropedicae SmR1]
          Length = 592

 Score =  600 bits (1547), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 282/294 (95%), Positives = 288/294 (97%)

Query: 1   VAAIKSTIPTRRFDAVIVGAGGSGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGA 60
           +AAIKS I TRRFDAVIVGAGGSGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGA
Sbjct: 1   MAAIKSAITTRRFDAVIVGAGGSGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGA 60

Query: 61  SLGNMSEDNWYWHMFDTVKGSDYLGDQDAIEFMCREAPKAVYELEHFGMPFDRNADGTIY 120
           SLGNMSEDNWYWHMFDTVKGSDYLGDQDAIEFMCREAPKAVYELEHFGMPFDRN DGTIY
Sbjct: 61  SLGNMSEDNWYWHMFDTVKGSDYLGDQDAIEFMCREAPKAVYELEHFGMPFDRNPDGTIY 120

Query: 121 QRPFGGHSANFGEKPVARACAAADRTGHALLHTLYQRNVRAKTHFFVEWMAIDVIRDNEG 180
           QRPFGGH+AN GEKPV RACAAADRTGHALLHTLYQRNVRAKTHFFVEWMA+D+IR+ EG
Sbjct: 121 QRPFGGHTANLGEKPVQRACAAADRTGHALLHTLYQRNVRAKTHFFVEWMALDLIRNEEG 180

Query: 181 DVIGVVALEMETGEIMMLHAKTTLFATGGAGRIWAASTNAFINTGDGMGMAARAGLPLQD 240
           DV+GVVALEMETGEIMMLHAKTTLFATGGAGRIWAASTNAFINTGDGMGMAARAGLPLQD
Sbjct: 181 DVLGVVALEMETGEIMMLHAKTTLFATGGAGRIWAASTNAFINTGDGMGMAARAGLPLQD 240

Query: 241 MEFWQFHPTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPTLKDLAPRDFV 294
           MEFWQFHPTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPTLKDLAPRDFV
Sbjct: 241 MEFWQFHPTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPTLKDLAPRDFV 294


>gi|300311535|ref|YP_003775627.1| L-aspartate oxidase
           [Herbaspirillum seropedicae SmR1]
          Length = 534

 Score =  126 bits (317), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 104/298 (34%), Positives = 150/298 (50%), Gaps = 27/298 (9%)

Query: 14  DAVIVGAGGSGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWYWH 73
           D  I+G+G +G+  +L LAE    V V+SK       +  AQGGI A L   S D+   H
Sbjct: 4   DVAILGSGLAGLSVALHLAEK-YQVVVVSKGELLDGASNWAQGGIAAVLD--SHDSHAQH 60

Query: 74  MFDTVKGSDYLGDQDAIEFMCREAPKAVYELEHFGMPFDRNADGTIYQRPFGGHSANFGE 133
           + DT+     L D+ A   +  +  +A+  L   G+PF R+    +     G H    G 
Sbjct: 61  IADTLVAGAGLCDESATRTIVEQGREAIEWLIEQGVPFTRDDSAEL-----GYHLTREGG 115

Query: 134 KPVARACAAADRTGHALLHTLYQRNVRAKTH--FFVEWMAIDVIRDNEGDV------IGV 185
               R   AAD TGHA+  TL QR VRA  +        AID+I   + D       +GV
Sbjct: 116 HSQRRIIHAADATGHAVQVTLEQR-VRAHPNITLLEHHCAIDLIHARKLDAKAEPRCLGV 174

Query: 186 VALEMETGEIMMLHAKTTLFATGGAGRIWAASTNAFINTGDGMGMAARAGLPLQDMEFWQ 245
              +  +G+++ + A  T+ ATGGAG+++  ++N    TGDG+ MA RAG  + +MEF Q
Sbjct: 175 HVQDTASGKVLAIAAARTVLATGGAGKVYLYTSNPDSATGDGIAMAWRAGCRVANMEFIQ 234

Query: 246 FHPTGV---AGAGVLITEGVRGEGGILI------NSNGERFMERYAPTLKDLAPRDFV 294
           FHPT +        LI+E +RGEG +L        + G+RFM  +     +LAPRD V
Sbjct: 235 FHPTCLYHPYAKSFLISEALRGEGALLKLPLSAGAAAGQRFMPEHDER-AELAPRDVV 291


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.131    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,574,684
Number of extensions: 67952
Number of successful extensions: 238
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 2
Length of query: 491
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 402
Effective length of database: 1,198,455
Effective search space: 481778910
Effective search space used: 481778910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 132 (55.5 bits)