BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0169.0037.p
         (260 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312278|ref|YP_003776370.1| succinate dehydrogenase, hydrop...   198   3e-52

>gi|300312278|ref|YP_003776370.1| succinate dehydrogenase,
           hydrophobic subunit, cytochrome b556 with SdhD protein
           [Herbaspirillum seropedicae SmR1]
          Length = 136

 Score =  198 bits (504), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 101/114 (88%), Positives = 110/114 (96%)

Query: 1   MSEAAKPPRPQFRNINITQIAGYRMPLAALVSIMHRVSGLFLFLMLPFILYLLDNSLLSE 60
           MSEAAKP RPQFRNI++TQIAGYRMPLAA+VSIMHR+SGLFLFLMLPFILYLLD+SLLSE
Sbjct: 1   MSEAAKPQRPQFRNIHLTQIAGYRMPLAAIVSIMHRISGLFLFLMLPFILYLLDSSLLSE 60

Query: 61  GTFEYLKGFASNWFVKLVVLALSWAYLHHFCAGIRHLIMDNHIGLDKDSARSAT 114
           GTF+YLKGF S WFVKLV+LALSWAYLHHFCAGIRHLIMDNHIGLDKDSAR ++
Sbjct: 61  GTFDYLKGFTSGWFVKLVILALSWAYLHHFCAGIRHLIMDNHIGLDKDSARKSS 114


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.331    0.139    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 716,064
Number of extensions: 23121
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 177
Effective length of database: 1,226,865
Effective search space: 217155105
Effective search space used: 217155105
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 129 (54.3 bits)