BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0169.0036.p
         (281 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312279|ref|YP_003776371.1| GntR family transcription regul...   484   e-138
gi|300313880|ref|YP_003777972.1| transcription regulator protein...   138   6e-34

>gi|300312279|ref|YP_003776371.1| GntR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 334

 Score =  484 bits (1245), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 234/270 (86%), Positives = 249/270 (92%)

Query: 12  RVFVVKFGVMSSSLPNLNNSDAQSVGTSVAGAAPTFSPLYQQIKALITQRLESGEWKPGE 71
           R FVVKF VMSS LPN NN+DA + G  VA  APTFSPLYQQIKALI QRLE+GEWKPGE
Sbjct: 65  RTFVVKFEVMSSILPNSNNADAHAAGAGVASPAPTFSPLYQQIKALIMQRLEAGEWKPGE 124

Query: 72  LIPSEVELGNRFKVSQGTVRKAIDELAAENLVVRRQGKGTFVATHHETHAQFRFLRLTAD 131
           LIPSEVELG+RFKVSQGTVRKAIDELAAENLVVRRQGKGTFVATHHET AQFRFLRL AD
Sbjct: 125 LIPSEVELGSRFKVSQGTVRKAIDELAAENLVVRRQGKGTFVATHHETQAQFRFLRLMAD 184

Query: 132 TDGPQRAENKIIEVKRVRAPAEVARQLDMKSGDSVIFIKRVKSFNGVPTILEEIWLPGLI 191
           +D PQR ENKIIEVKRVRA AEVARQLDMKSGDSVIFI+RVKSFNGVP ILE+IWLPG I
Sbjct: 185 SDEPQRPENKIIEVKRVRASAEVARQLDMKSGDSVIFIRRVKSFNGVPIILEDIWLPGAI 244

Query: 192 FKGLTAERLMEYKGPLYGLFETEFGTRMIRAEEQIRAVGADPESAELLGVPPQTPLLSVD 251
           FKGLTAERL+EY+GPLYGLFE+EFGTRMIRAEE+IRAVGADP++AE LGV PQTPLLSV+
Sbjct: 245 FKGLTAERLVEYRGPLYGLFESEFGTRMIRAEERIRAVGADPDAAEFLGVTPQTPLLSVE 304

Query: 252 RASFTYGDKPVEMRRGLYLTLNHHYQSELN 281
           RASFTYGDKPVEMRRGLYLT NHHYQSEL+
Sbjct: 305 RASFTYGDKPVEMRRGLYLTTNHHYQSELS 334


>gi|300313880|ref|YP_003777972.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score =  138 bits (347), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 126/233 (54%)

Query: 49  PLYQQIKALITQRLESGEWKPGELIPSEVELGNRFKVSQGTVRKAIDELAAENLVVRRQG 108
           PLY Q++ L+  ++ + +W+PG+ IPSE EL   ++V+ GTVR+AI+ L AE LV R  G
Sbjct: 12  PLYLQLRDLLATQIRAQKWQPGQPIPSEAELSQTYQVAVGTVRRAIETLMAEGLVERTHG 71

Query: 109 KGTFVATHHETHAQFRFLRLTADTDGPQRAENKIIEVKRVRAPAEVARQLDMKSGDSVIF 168
           +GTFV      ++ FRF R  +    P   ++ I+  K V APA+ A  L +K    VI 
Sbjct: 72  RGTFVRKARFDNSLFRFFRFESADGRPLAPKSVIVSRKLVEAPAQAAEALQLKPHAKVIE 131

Query: 169 IKRVKSFNGVPTILEEIWLPGLIFKGLTAERLMEYKGPLYGLFETEFGTRMIRAEEQIRA 228
           + R++  +G P + E I+L    FK L  +   E+   LY L+E E G  +  A E +  
Sbjct: 132 LHRLRMVDGQPVLAENIYLCAQRFKALADKAPEEFGDLLYPLYERECGLIVASARETLTV 191

Query: 229 VGADPESAELLGVPPQTPLLSVDRASFTYGDKPVEMRRGLYLTLNHHYQSELN 281
                  A+LLG+  +TP++ ++R +F    +P+E R+         Y +E+ 
Sbjct: 192 ETVTAAQAKLLGLTEKTPVVMIERIAFGSDGQPLEWRQSRGAASKFRYSAEIR 244


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 856,312
Number of extensions: 34632
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 3
Length of query: 281
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 197
Effective length of database: 1,222,130
Effective search space: 240759610
Effective search space used: 240759610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)