BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0169.0030.p
         (352 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312284|ref|YP_003776376.1| hypothetical protein Hsero_2980...   476   e-135

>gi|300312284|ref|YP_003776376.1| hypothetical protein Hsero_2980
           [Herbaspirillum seropedicae SmR1]
          Length = 415

 Score =  476 bits (1225), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 231/359 (64%), Positives = 280/359 (77%), Gaps = 7/359 (1%)

Query: 1   MIDAALDHLFKSDLDGYDVLVEAVEANSEACALDYDGKVYSVQLLALPVLAWTRFSIASG 60
           +IDAALDHLFK+DLD YDVL+EAVEA SEA +L+++G+ Y VQLL LPVLAWTRF+IASG
Sbjct: 57  LIDAALDHLFKADLDAYDVLIEAVEAGSEATSLEHEGQDYDVQLLVLPVLAWTRFAIASG 116

Query: 61  NLPADVRNGLFAHLHAHVLADNVHLALAPPLYAIEQLPRHHADVFALTQRMGQSALKQST 120
            + +++ + + AHLHAHVLA +  LALAP L++IEQLPR HADVFALT++MGQ+ALK   
Sbjct: 117 PIASEMLSAIGAHLHAHVLAKDARLALAPALFSIEQLPRMHADVFALTRQMGQTALKTGP 176

Query: 121 PQLSLEHTPTAPFLADTRYLIAAVAVPTGAPVFRWQMDENSSTIH-EREAALEAWTAQAT 179
            QL  E  PTA FLADTRY+IAAV VP G  +F WQ  E  S     + AA EAW  QAT
Sbjct: 177 VQLRGEQPPTAAFLADTRYVIAAVVVPAGGALFHWQESEQQSHFSANKAAAFEAWKQQAT 236

Query: 180 PLLTRFLPGCNVELLLPQPYYFACREADKRIRPAAIRAADHYLTQTLGVASSELHANIGS 239
           PL TR LPGC+VELLLPQ Y+F CREADKRIRPA+IRAAD++LTQTL ++S++LHA+IG 
Sbjct: 237 PLFTRLLPGCSVELLLPQAYFFGCREADKRIRPASIRAADYFLTQTLDISSADLHASIGG 296

Query: 240 FCENINGQIDEYRVGFSLGNDDGVVYGIVWPLYEQEDGDEVRDLSAPDS------PRTPI 293
           F E+INGQIDEYR+GFS+G D  VVYG VWPLYEQE G+++  +    +      P +P+
Sbjct: 297 FSEDINGQIDEYRIGFSIGGDPTVVYGTVWPLYEQESGEDLPMMIPGGAGLLEGLPASPL 356

Query: 294 EEILGVLRECGIVQIKLHEERYTMEFCDDCGTPLFPAPDGDLVHAEMPEDAPASTEHFH 352
           ++IL VLRECGIV IK H ER+TMEFCDDCG PLFP  +G+LVHAEMPED P   EHFH
Sbjct: 357 QQILTVLRECGIVHIKHHAERFTMEFCDDCGAPLFPDREGELVHAEMPEDTPPPVEHFH 415


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,236,360
Number of extensions: 55316
Number of successful extensions: 152
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 266
Effective length of database: 1,212,660
Effective search space: 322567560
Effective search space used: 322567560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)