BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0169.0029.p
         (148 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312286|ref|YP_003776378.1| signal-transducing histidine ki...   278   2e-76
gi|300309957|ref|YP_003774049.1| chemotaxis histidine kinase [He...    91   5e-20

>gi|300312286|ref|YP_003776378.1| signal-transducing histidine
           kinase CheA protein [Herbaspirillum seropedicae SmR1]
          Length = 697

 Score =  278 bits (710), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 137/148 (92%), Positives = 145/148 (97%)

Query: 1   LTLAILDGMSIRIGHEIYILPLGYVVESLQPATQDVKEISGQGKVIKVRGEYLPLIPLYQ 60
           LTLAILDGMSIRIG E+YILPLGYVVESLQP  QD+KEISGQG+V++VRGEYLPLIPLYQ
Sbjct: 550 LTLAILDGMSIRIGEEVYILPLGYVVESLQPLAQDIKEISGQGQVLRVRGEYLPLIPLYQ 609

Query: 61  IFNIEPTFTDPSQGLVVILESDGKKAALFVDDLIGQQQIVVKNLESNYRKVAGISGATIL 120
           IFNIEP+FTDPSQGLVVILESDGKKAALFVDDLIGQQQIVVKNLESNYRKVAGISGATIL
Sbjct: 610 IFNIEPSFTDPSQGLVVILESDGKKAALFVDDLIGQQQIVVKNLESNYRKVAGISGATIL 669

Query: 121 GDGGVALIIDVAALLRSSRQLSDESVFS 148
           GDGGVALI+DVAALLRSSRQL+DESVFS
Sbjct: 670 GDGGVALIVDVAALLRSSRQLNDESVFS 697


>gi|300309957|ref|YP_003774049.1| chemotaxis histidine kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 725

 Score = 90.5 bits (223), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 52/140 (37%), Positives = 86/140 (61%), Gaps = 7/140 (5%)

Query: 1   LTLAILDGMSIRIGHEIYILPLGYVVESLQPATQDVKEISGQGKVIKVRGEYLPLIPLYQ 60
           LTLAI+ G  + +G+ ++++PL  VVE +     D+        ++ VR E LP +PL +
Sbjct: 575 LTLAIISGFQVVVGNAVFVIPLDMVVECI-----DMPPQQPGSHIVNVRDEPLPFVPLRE 629

Query: 61  IFNIEPTFTDPSQGLVVILESDGKKAALFVDDLIGQQQIVVKNLESNYRKVAGISGATIL 120
           +F++     +  +  +VI++    +A L VD L+G+ Q V+K L   + KV G+SG+TIL
Sbjct: 630 LFDL--PARERGRNSLVIVQYGPLRAGLLVDGLLGECQAVIKPLGRLFGKVKGLSGSTIL 687

Query: 121 GDGGVALIIDVAALLRSSRQ 140
           GDG VALI+D+A L+  ++Q
Sbjct: 688 GDGRVALILDIAHLVHHTQQ 707


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.140    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 454,442
Number of extensions: 18220
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 3
Length of query: 148
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 71
Effective length of database: 1,255,275
Effective search space: 89124525
Effective search space used: 89124525
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)