BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0169.0027.p
         (166 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312284|ref|YP_003776376.1| hypothetical protein Hsero_2980...   202   1e-53

>gi|300312284|ref|YP_003776376.1| hypothetical protein Hsero_2980
           [Herbaspirillum seropedicae SmR1]
          Length = 415

 Score =  202 bits (513), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 99/151 (65%), Positives = 117/151 (77%), Gaps = 1/151 (0%)

Query: 6   LYAIEQLPRHHADVFALTQRMGQSALKQSTPQLSLEHTPTAPFLADTRYLIAAVAVPTGA 65
           L++IEQLPR HADVFALT++MGQ+ALK    QL  E  PTA FLADTRY+IAAV VP G 
Sbjct: 147 LFSIEQLPRMHADVFALTRQMGQTALKTGPVQLRGEQPPTAAFLADTRYVIAAVVVPAGG 206

Query: 66  PVFRWQMDENSSTIH-EREAALEAWTAQATPLLTRFLPGCNVELLLPQPYYFACREADKR 124
            +F WQ  E  S     + AA EAW  QATPL TR LPGC+VELLLPQ Y+F CREADKR
Sbjct: 207 ALFHWQESEQQSHFSANKAAAFEAWKQQATPLFTRLLPGCSVELLLPQAYFFGCREADKR 266

Query: 125 IRPAAIRAADHYLTQTLGVASSELHANIGSF 155
           IRPA+IRAAD++LTQTL ++S++LHA+IG F
Sbjct: 267 IRPASIRAADYFLTQTLDISSADLHASIGGF 297


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 523,500
Number of extensions: 21146
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 88
Effective length of database: 1,250,540
Effective search space: 110047520
Effective search space used: 110047520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)