BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0169.0025.p
         (174 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312286|ref|YP_003776378.1| signal-transducing histidine ki...   199   9e-53
gi|300309957|ref|YP_003774049.1| chemotaxis histidine kinase [He...    70   1e-13
gi|300312396|ref|YP_003776488.1| chemotaxis CheA protein [Herbas...    55   3e-09
gi|300312322|ref|YP_003776414.1| two component hybrid sensor his...    55   4e-09

>gi|300312286|ref|YP_003776378.1| signal-transducing histidine
           kinase CheA protein [Herbaspirillum seropedicae SmR1]
          Length = 697

 Score =  199 bits (506), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 106/157 (67%), Positives = 122/157 (77%), Gaps = 6/157 (3%)

Query: 23  MEKLLLAVNVSDPDDEDLNAIFRAAHSIKGGSATFGLNDITEVTHVLESLLDRIRQHEMA 82
           MEKLLLAVNV+ PD EDLNA+FRAAHSIKGGS+TFGL DI EVTHVLESLLDRIRQ +MA
Sbjct: 1   MEKLLLAVNVASPDPEDLNAVFRAAHSIKGGSSTFGLTDIAEVTHVLESLLDRIRQGQMA 60

Query: 83  LTSQHVDAFLAAKDVIKSMLDGHRHGATVDLNAAAEVRKLLQSLSEGGGK------KAKG 136
           LTS+HVDAFLAAKDV+KSMLDGH+HGA VD  A A+VR+LL++LS+G             
Sbjct: 61  LTSEHVDAFLAAKDVLKSMLDGHKHGADVDQGAVADVRRLLEALSQGKSSAPAKAAAPAA 120

Query: 137 AQPLAGQGGVSRYRIELPQLADRDIEALQQELGLLGK 173
                  GGV RYRIE+P +AD+D EAL  EL +LGK
Sbjct: 121 GGVPVAPGGVCRYRIEMPVIADKDAEALADELAMLGK 157


>gi|300309957|ref|YP_003774049.1| chemotaxis histidine kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 725

 Score = 69.7 bits (169), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 52/94 (55%)

Query: 15  EAEEGLAEMEKLLLAVNVSDPDDEDLNAIFRAAHSIKGGSATFGLNDITEVTHVLESLLD 74
           EA E L  ME  LL   +  P  + ++AIFRAAH+IKG +  F  + I + TH LE +L+
Sbjct: 13  EARELLVAMEAALLQTEMEGPSRDSIHAIFRAAHTIKGSAGLFAFDSIVQFTHHLEHVLE 72

Query: 75  RIRQHEMALTSQHVDAFLAAKDVIKSMLDGHRHG 108
           R+R+  +AL S  +   L   D I  ++D    G
Sbjct: 73  RVREERLALDSHLMSLLLQCSDYIGELVDAIERG 106


>gi|300312396|ref|YP_003776488.1| chemotaxis CheA protein
           [Herbaspirillum seropedicae SmR1]
          Length = 638

 Score = 55.5 bits (132), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 11/118 (9%)

Query: 23  MEKLLLAVNVSD--------PDD-EDLNAIFRAAHSIKGGSATFGLNDITEVTHVLESLL 73
           +E L LA NV +        PDD E LNA+FRA H+IKGG+    L  +    H+ E+L 
Sbjct: 11  VEALELATNVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMVSACHLTENLF 70

Query: 74  DRIRQHEMALTSQHVDAFLAAKDVIKSMLDGHRHGATVDLNAA--AEVRKLLQSLSEG 129
           D +R  +  +T   ++A L A   +   L+   +GA  D  A+   E++ +L    EG
Sbjct: 71  DALRTGKAPVTPLAIEAALQASGFVADQLNELSNGAAPDSLASMPGELKDILTQAIEG 128


>gi|300312322|ref|YP_003776414.1| two component hybrid sensor
           histidine kinase/response regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 775

 Score = 54.7 bits (130), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 65/140 (46%), Gaps = 9/140 (6%)

Query: 2   TIDMSQF--FQVFFDEAEEGLAEMEKLLLAVNVSDPDDEDLNAIFRAAHSIKGGSATFGL 59
           T D+SQ     +F  EAE  +A++   LLA+       + L A  RA HS+KG +   GL
Sbjct: 3   TPDLSQMSMLDLFRFEAESQIAQLNASLLALEQQPTAADHLEACMRAGHSLKGAARIVGL 62

Query: 60  NDITEVTHVLESLLDRIRQHEMALTSQHVDAFLAAKDV---IKSMLDGHRHGATVDLNAA 116
               +V HVLE      +Q  + L  +H+D  L   D+   I +  DG    A  D   +
Sbjct: 63  EPAVKVAHVLEDCFVLAQQGRLLLQKKHIDVLLRGADLLARIAAPPDGDE--AWADHAGS 120

Query: 117 AEVRKLLQSLSE--GGGKKA 134
           AEV+  L +L     GG  A
Sbjct: 121 AEVQAFLVALPSVMSGGDAA 140


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.134    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 537,400
Number of extensions: 21360
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 5
Length of query: 174
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,245,805
Effective search space: 118351475
Effective search space used: 118351475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)