BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0169.0024.p (122 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbas... 231 2e-62 gi|300309955|ref|YP_003774047.1| two-component system sensor his... 122 6e-30 gi|300311034|ref|YP_003775126.1| chemotaxis response regulator p... 99 9e-23 gi|300311785|ref|YP_003775877.1| chemotaxis response regulator C... 97 3e-22 gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbas... 90 6e-20 >gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbaspirillum seropedicae SmR1] Length = 121 Score = 231 bits (588), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 114/121 (94%), Positives = 116/121 (95%) Query: 2 MSKTILAVDDSGSLRQMVVFSLKAAGYQVTEAVDGQDALDKAKLQTFDLVLTDQNMPRMD 61 MSKTILAVDDSGSLRQMVVFSLKAAGY VTEAVDG DAL+KAK QTFDLVLTDQNMPRMD Sbjct: 1 MSKTILAVDDSGSLRQMVVFSLKAAGYNVTEAVDGVDALEKAKSQTFDLVLTDQNMPRMD 60 Query: 62 GLTLIRSLRALTSYQRVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVKKVI 121 GLTLIRSLR LTSY RVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVV+KVI Sbjct: 61 GLTLIRSLRELTSYARVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVI 120 Query: 122 G 122 G Sbjct: 121 G 121 >gi|300309955|ref|YP_003774047.1| two-component system sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 122 Score = 122 bits (307), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 58/120 (48%), Positives = 81/120 (67%) Query: 2 MSKTILAVDDSGSLRQMVVFSLKAAGYQVTEAVDGQDALDKAKLQTFDLVLTDQNMPRMD 61 M K IL VDDS SLRQ + +LK+AGY V EA DG+ AL + F+LV++D NMP +D Sbjct: 1 MEKNILIVDDSFSLRQTISAALKSAGYHVEEAADGKQALAHLDGRKFNLVISDLNMPHLD 60 Query: 62 GLTLIRSLRALTSYQRVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVKKVI 121 GL+ +R ++ + +Y+ P++MLTTE S+ K +GKAAG W+ KPF P L + V K+I Sbjct: 61 GLSFVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAVAKLI 120 >gi|300311034|ref|YP_003775126.1| chemotaxis response regulator protein [Herbaspirillum seropedicae SmR1] Length = 126 Score = 99.0 bits (245), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 56/120 (46%), Positives = 76/120 (63%), Gaps = 1/120 (0%) Query: 3 SKTILAVDDSGSLRQMVVFSLKAAGYQVTEAVDGQDALDKAKL-QTFDLVLTDQNMPRMD 61 SK+I VDDS ++ V L+ AG+ V A DG AL K + DL++TD NMP MD Sbjct: 4 SKSIFLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKPDLLITDINMPNMD 63 Query: 62 GLTLIRSLRALTSYQRVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVKKVI 121 GL LIR++RAL ++ +PIL LTTE + +GK AGA GWLVKP L ++V++V+ Sbjct: 64 GLELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIVRQVL 123 >gi|300311785|ref|YP_003775877.1| chemotaxis response regulator CheY [Herbaspirillum seropedicae SmR1] Length = 122 Score = 97.4 bits (241), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 56/118 (47%), Positives = 71/118 (60%), Gaps = 1/118 (0%) Query: 6 ILAVDDSGSLRQMVVFSLKAAGYQVTEAVDGQDALDKAKLQ-TFDLVLTDQNMPRMDGLT 64 IL VDDS ++R V LK G V AVDG+D L K K LV++D NMP MDGLT Sbjct: 4 ILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLSKLKGDPAIKLVVSDVNMPNMDGLT 63 Query: 65 LIRSLRALTSYQRVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVKKVIG 122 + +R+ V I+MLTTE S MK +GKAAG GW+VKPF + + KK++G Sbjct: 64 MAEKIRSELGNASVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGEAVLPTFKKLVG 121 >gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 131 Score = 89.7 bits (221), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 49/117 (41%), Positives = 69/117 (58%), Gaps = 1/117 (0%) Query: 6 ILAVDDSGSLRQMVVFSLKAAGY-QVTEAVDGQDALDKAKLQTFDLVLTDQNMPRMDGLT 64 L VDD ++R++V LK GY V EA DG AL K + FD V++D NMP MDGLT Sbjct: 8 FLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQFDFVVSDWNMPNMDGLT 67 Query: 65 LIRSLRALTSYQRVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVKKVI 121 +++ +R + ++P+LM+T E E AGANG++VKPF L E + K+ Sbjct: 68 MLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKLGKIF 124 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.133 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 284,062 Number of extensions: 8584 Number of successful extensions: 154 Number of sequences better than 1.0e-08: 44 Number of HSP's gapped: 148 Number of HSP's successfully gapped: 44 Length of query: 122 Length of database: 1,619,870 Length adjustment: 74 Effective length of query: 48 Effective length of database: 1,269,480 Effective search space: 60935040 Effective search space used: 60935040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)