BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0169.0020.p
         (241 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312291|ref|YP_003776383.1| hypothetical protein Hsero_2987...   243   8e-66

>gi|300312291|ref|YP_003776383.1| hypothetical protein Hsero_2987
           [Herbaspirillum seropedicae SmR1]
          Length = 159

 Score =  243 bits (621), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 120/159 (75%), Positives = 136/159 (85%)

Query: 83  LLLLFWSTFRSQVPFYPSGQATWDAVAGLLPADQPLRVIDIGSGLGGAVLYLSRLRPDSR 142
           +LLLFWSTFRSQVPFYPSGQA WDAVAGLLPAD+ +R +DIGSGLGGAVL L+R RP+S 
Sbjct: 1   MLLLFWSTFRSQVPFYPSGQAAWDAVAGLLPADRAIRFLDIGSGLGGAVLDLARRRPESE 60

Query: 143 FVGIELAPLPWLVSQVRALLGRSRGAFVRGDYTRLDFSDYDVIFAYLSPAAMTALWQKAR 202
           F+GIE+APLPWLVS++RA LGR R  FVRGDY  LDF+DYDVIFAYLSPAAM ALW+KAR
Sbjct: 61  FIGIEIAPLPWLVSRLRAALGRHRCRFVRGDYLLLDFADYDVIFAYLSPAAMVALWRKAR 120

Query: 203 VEMRPGTLLLSYEFIIEDMQPDVVVHPKENGPALYGWRM 241
            EMRPG+LLLSYEF I    PDVV+ P+  GP L+GWRM
Sbjct: 121 AEMRPGSLLLSYEFHIPGATPDVVIQPEGGGPVLHGWRM 159


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.144    0.474 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 680,929
Number of extensions: 26756
Number of successful extensions: 131
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 158
Effective length of database: 1,226,865
Effective search space: 193844670
Effective search space used: 193844670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)