BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0169.0012.p (207 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312302|ref|YP_003776394.1| acetoacetyl-CoA reductase [Herb... 391 e-110 gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein... 140 8e-35 gi|300313009|ref|YP_003777101.1| 3-oxoacyl-(acyl-carrier-protein... 128 3e-31 gi|300310426|ref|YP_003774518.1| gluconate 5-dehydrogenase oxido... 121 4e-29 gi|300313110|ref|YP_003777202.1| 3-oxoacyl-(acyl-carrier-protein... 118 4e-28 >gi|300312302|ref|YP_003776394.1| acetoacetyl-CoA reductase [Herbaspirillum seropedicae SmR1] Length = 246 Score = 391 bits (1005), Expect = e-110, Method: Compositional matrix adjust. Identities = 188/206 (91%), Positives = 199/206 (96%) Query: 1 MVKRIAYVTGGMGGIGTPICARLAKDGFTVVAGCGPNSTRKDKWLASMREQGFDVHASEG 60 M KRIAYVTGGMGGIGT IC RL KDG+TVVAGCGPNSTRKDKWLA+MREQGFD+HASEG Sbjct: 1 MSKRIAYVTGGMGGIGTAICTRLCKDGYTVVAGCGPNSTRKDKWLATMREQGFDIHASEG 60 Query: 61 NVADWDSTKAAFDKVRAEIGEVDVLVNNAGITRDGQFRKMSKSDWDAVIDTNLNSLFNVT 120 NV++W+STKAAF+KVRAEIGEVDVLVNNAGITRDGQFRKMSK DWDAVIDTNLNSLFNVT Sbjct: 61 NVSNWESTKAAFEKVRAEIGEVDVLVNNAGITRDGQFRKMSKDDWDAVIDTNLNSLFNVT 120 Query: 121 KQVIEGMVDRNWGRIINISSVNGQKGQFGQTNYSTAKAGIHGFTMALAQEVATKGVTVNT 180 KQVIEGM +R +GRIINISSVNGQKGQFGQTNYSTAKAGIHGFTMALAQEVATKGVTVNT Sbjct: 121 KQVIEGMCERGFGRIINISSVNGQKGQFGQTNYSTAKAGIHGFTMALAQEVATKGVTVNT 180 Query: 181 VSPGYVGTDMVRAIRPEVLEKIVAGI 206 VSPGY+GTDMVRAIRPEVLEKIV+GI Sbjct: 181 VSPGYIGTDMVRAIRPEVLEKIVSGI 206 >gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein] reductase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 251 Score = 140 bits (353), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 80/211 (37%), Positives = 128/211 (60%), Gaps = 14/211 (6%) Query: 4 RIAYVTGGMGGIGTPICARLAKDGFTVV--AGCGPNSTRKDKWLASMREQGFDVHASEG- 60 ++A VTG GIG I LA+ G V+ A + ++LA++ + A G Sbjct: 9 QVALVTGASRGIGRAIATELARQGAKVIGTATSESGAAAITEYLAALGPE-----AGRGA 63 Query: 61 --NVADWDSTKAAFDKVRAEIGEVDVLVNNAGITRDGQFRKMSKSDWDAVIDTNLNSLFN 118 NV D +++ A ++V+ + G + +LVNNAGIT+D +M +WD+VI TNL ++ Sbjct: 64 VLNVNDAEASVALVEQVQKDFGSLSILVNNAGITQDQLAMRMKDEEWDSVIATNLTAVGR 123 Query: 119 VTKQVIEGMVDRNWGRIINISSVNGQKGQFGQTNYSTAKAGIHGFTMALAQEVATKGVTV 178 +++ V+ GM+ GRIINI+SV G+ G GQ NY+ AKAG+ G + ALA+E+ ++ +TV Sbjct: 124 LSRAVLRGMMKARTGRIINITSVVGEAGNPGQMNYAAAKAGVAGMSRALAREIGSRNITV 183 Query: 179 NTVSPGYVGTDMVRAIRPE----VLEKIVAG 205 N V+PG++ TDM RA+ + +L++I G Sbjct: 184 NCVAPGFIDTDMTRALNEQQSAAILQQIPLG 214 >gi|300313009|ref|YP_003777101.1| 3-oxoacyl-(acyl-carrier-protein) reductase [Herbaspirillum seropedicae SmR1] Length = 245 Score = 128 bits (322), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 79/200 (39%), Positives = 110/200 (55%), Gaps = 2/200 (1%) Query: 7 YVTGGMGGIGTPICARLAKDGFTVVAGCGPNSTRKDKWLASMREQGFDVHASEGNVADWD 66 +VTG GIG I RLA++G+ +V C D+ A + G V + +VA+ + Sbjct: 10 FVTGSSRGIGRAIALRLAREGYDIVLHCHARRDAADQVAAEIAALGRQVRVLQFDVANRE 69 Query: 67 STKAAFDKVRAEIGEVDVLVNNAGITRDGQFRKMSKSDWDAVIDTNLNSLFNVTKQVIEG 126 + G +V NAGITRD F M DWD+V+ TNL+ +NV ++ Sbjct: 70 QAAQVLLADVEQHGCYYGVVCNAGITRDNAFPAMPGEDWDSVLRTNLDGFYNVLNPLVMP 129 Query: 127 MVDRNW-GRIINISSVNGQKGQFGQTNYSTAKAGIHGFTMALAQEVATKGVTVNTVSPGY 185 MV R GRI+ ++SV+G G GQ NYS AKAG+ G T ALA E+A + +TVN V+PG Sbjct: 130 MVRRRAAGRIVTLASVSGLIGNRGQVNYSAAKAGVIGATKALALELAKRDITVNCVAPGL 189 Query: 186 VGTDMVR-AIRPEVLEKIVA 204 + TDM A E+L+ I A Sbjct: 190 IDTDMTEDAPIDEILKLIPA 209 >gi|300310426|ref|YP_003774518.1| gluconate 5-dehydrogenase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 264 Score = 121 bits (303), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 67/191 (35%), Positives = 103/191 (53%), Gaps = 1/191 (0%) Query: 4 RIAYVTGGMGGIGTPICARLAKDGFTVVAGCGPNSTRKDKWLASMREQGFDVHASEGNVA 63 ++A +TG GGIG + +A+ G +V G ++ + A +R +G +H S + Sbjct: 20 KLALITGSSGGIGLALARGMAQAGAAIVLN-GRDAGKLAAVAAQLRAEGHTIHESSFDAT 78 Query: 64 DWDSTKAAFDKVRAEIGEVDVLVNNAGITRDGQFRKMSKSDWDAVIDTNLNSLFNVTKQV 123 + KAA K+ +EIG + +LVNNAGI R + +SDW +I TNLNS+F + V Sbjct: 79 SSEEVKAAVQKIESEIGPIGILVNNAGIQRRNPLEEFKESDWHDLISTNLNSVFFAAQAV 138 Query: 124 IEGMVDRNWGRIINISSVNGQKGQFGQTNYSTAKAGIHGFTMALAQEVATKGVTVNTVSP 183 M+ R G+IINI SV + G+ G Y+ K + FT +A + G+ VN + P Sbjct: 139 ARHMIPRGAGKIINICSVQSELGRPGIAPYTATKGAVKMFTKGMAIDWGKYGIQVNGLGP 198 Query: 184 GYVGTDMVRAI 194 GY T+M A+ Sbjct: 199 GYFKTEMNMAL 209 >gi|300313110|ref|YP_003777202.1| 3-oxoacyl-(acyl-carrier-protein) reductase [Herbaspirillum seropedicae SmR1] Length = 256 Score = 118 bits (295), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 69/194 (35%), Positives = 102/194 (52%), Gaps = 1/194 (0%) Query: 4 RIAYVTGGMGGIGTPICARLAKDGFTVVAGCGPNSTRKDKWLASMREQGFDVHASEGNVA 63 R+A VTGG GIG I +LA G TV+ N K ++ G + ++ Sbjct: 9 RVALVTGGAMGIGASISQQLAAKGHTVLV-ADINLDAASKTADALVAAGHRAAPLQMDLG 67 Query: 64 DWDSTKAAFDKVRAEIGEVDVLVNNAGITRDGQFRKMSKSDWDAVIDTNLNSLFNVTKQV 123 +S AAF + + G DVLVNNAG+ R F +W ++ N+ + + Sbjct: 68 SPESIAAAFAHIEKDYGRCDVLVNNAGVARTYSFLDYPLENWLQTMNVNVTGVLLAGQHA 127 Query: 124 IEGMVDRNWGRIINISSVNGQKGQFGQTNYSTAKAGIHGFTMALAQEVATKGVTVNTVSP 183 MV + WGRI+NISS++G + G+T Y T+KA + G T +A E+A G+TVN+V+P Sbjct: 128 ARLMVKQQWGRIVNISSISGIRAGAGRTAYGTSKAAVIGLTRQMAIELAQYGITVNSVAP 187 Query: 184 GYVGTDMVRAIRPE 197 G V T M +A+ E Sbjct: 188 GPVDTPMTQAMHSE 201 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.133 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 662,502 Number of extensions: 26209 Number of successful extensions: 178 Number of sequences better than 1.0e-08: 47 Number of HSP's gapped: 121 Number of HSP's successfully gapped: 47 Length of query: 207 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 126 Effective length of database: 1,236,335 Effective search space: 155778210 Effective search space used: 155778210 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)