BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0169.0011.p
         (306 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312303|ref|YP_003776395.1| poly(3-hydroxyalkanoate) synthe...   465   e-132
gi|300311720|ref|YP_003775812.1| poly-beta-hydroxyalkanoate synt...   186   2e-48

>gi|300312303|ref|YP_003776395.1| poly(3-hydroxyalkanoate)
           synthetase [Herbaspirillum seropedicae SmR1]
          Length = 588

 Score =  465 bits (1197), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 223/285 (78%), Positives = 251/285 (88%), Gaps = 2/285 (0%)

Query: 24  LSGQDKINALGFCVGGTILSCALAVLAARGEDPVASLTLLTAFLNFLDTGAIDVYIDDVQ 83
           +S Q +INALGFCVGGTILSCALA+LAARGEDPVASLTLLT FL+F DTGAIDVYID++Q
Sbjct: 300 ISKQPQINALGFCVGGTILSCALALLAARGEDPVASLTLLTTFLDFSDTGAIDVYIDEMQ 359

Query: 84  IGMREQMIGKSGLMAGRDFASAFSSLRPNDLLWNYVESNYLKGETPQAFDLLYWNADSTN 143
           + +REQMIG+ GLMAGRDFASAFSSLRPNDLLWNYVESNYLKGE P AFDLLYWNADSTN
Sbjct: 360 LALREQMIGQRGLMAGRDFASAFSSLRPNDLLWNYVESNYLKGEKPSAFDLLYWNADSTN 419

Query: 144 LPGPMFCYYLRHMYLENALKEPGKLTIAGEKIDLYKLNMPAFIYASREDHIVPWASAYAS 203
           LPGPMFCYYLRHMYLENALKEPG+LT+ GEKIDL K+N PAFIYASR+DHIVPW SAYAS
Sbjct: 420 LPGPMFCYYLRHMYLENALKEPGRLTVGGEKIDLRKINAPAFIYASRDDHIVPWKSAYAS 479

Query: 204 TSILNARKPGNNRFVLGASGHIAGVINPPAKKKRSYWTND--KIGADPEAWFAGAVEHPG 261
             ++N  K  NNRFVLGASGHIAGVINP +K KR+YW ND  K G+  +AW AGA EHPG
Sbjct: 480 LGLINTAKRSNNRFVLGASGHIAGVINPASKNKRNYWINDKAKAGSGADAWLAGATEHPG 539

Query: 262 SWWTEWSDFLSRHAGKQVAAPKKAGSAKYKAIEPAPGRYVKVRAE 306
           SWW +W+ FL++H G++VAAPK AGS +YK IEPAPGRYVKV+A+
Sbjct: 540 SWWGQWAAFLAKHGGRKVAAPKAAGSTRYKHIEPAPGRYVKVKAD 584


>gi|300311720|ref|YP_003775812.1| poly-beta-hydroxyalkanoate
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 590

 Score =  186 bits (472), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 97/277 (35%), Positives = 155/277 (55%), Gaps = 10/277 (3%)

Query: 29  KINALGFCVGGTILSCALAVLAARGEDPVASLTLLTAFLNFLDTGAIDVYIDDVQIGMRE 88
           K++ +G+C+GGT+LS A A +A  G+  +ASLTLL A  +F + G + ++ID+ QI + E
Sbjct: 317 KVHGVGYCLGGTLLSIAAAAMARDGDQRLASLTLLAAQTDFTEPGELGLFIDESQISLLE 376

Query: 89  QMIGKSGLMAGRDFASAFSSLRPNDLLWNYVESNYLKGETPQAFDLLYWNADSTNLPGPM 148
             + ++G ++    A+AF  LR  DLLW+ V   YL G      DL+ WNAD+T +P  M
Sbjct: 377 AQMQQAGTLSQSQMAAAFQMLRSYDLLWSRVIRQYLMGVPAHNSDLMEWNADATRMPALM 436

Query: 149 FCYYLRHMYLENALKEPGKLTIAGEKIDLYKLNMPAFIYASREDHIVPWASAYASTSILN 208
              YLR ++L++ L E G+  + G+ + L  +N+P F+  +  DH+ PW S Y     L+
Sbjct: 437 HSQYLRRLFLDDDLSE-GRYEVDGKPVLLADVNLPVFLVGTVRDHVAPWRSVYK----LH 491

Query: 209 ARKPGNNRFVLGASGHIAGVINPPAKKKRSYWTNDKIGA----DPEAWFAGAVEHPGSWW 264
           +  P    FVL + GH AG+++PP   +  +  + +         + W AG     GSWW
Sbjct: 492 SLCPAEITFVLASGGHNAGIVSPPGHPRSQFQISTRAAGASYRSADEWMAGTSVTTGSWW 551

Query: 265 TEWSDFLSRHAGKQVAAPKKAGSAKYKAIEPAPGRYV 301
             W+D+L++ +G  V A    G  K  ++  APG Y+
Sbjct: 552 PAWADWLAQRSGTPVPA-AGMGYDKAHSLADAPGNYI 587


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,103,266
Number of extensions: 48699
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 2
Length of query: 306
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 221
Effective length of database: 1,217,395
Effective search space: 269044295
Effective search space used: 269044295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)