BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0169.0010.p
         (289 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312303|ref|YP_003776395.1| poly(3-hydroxyalkanoate) synthe...   412   e-116
gi|300311720|ref|YP_003775812.1| poly-beta-hydroxyalkanoate synt...   150   1e-37

>gi|300312303|ref|YP_003776395.1| poly(3-hydroxyalkanoate)
           synthetase [Herbaspirillum seropedicae SmR1]
          Length = 588

 Score =  412 bits (1060), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 192/257 (74%), Positives = 225/257 (87%)

Query: 2   PAAGQLDVQSIQKQLGDLGAKLDPADVARLQRDYADQFASLWQTAISSQIPAVTDRRMSA 61
           PA  Q+D  +  KQL D GA +DPA++ RLQ+DY  QF +LWQ+ ++++ PA+TDRR+SA
Sbjct: 38  PAGSQVDPTAFLKQLADNGATIDPAELVRLQQDYTQQFGALWQSMLAAKTPAITDRRLSA 97

Query: 62  PAWQSNPFFAFHAAAYQLNARFLTSMVDAVQSTDKVKQKLRFAVQQMIDALSPANFLATN 121
           PAWQ +P+FAF AAAYQLN+RFL ++ DAVQ ++KV+ KLRFAVQQMIDA+SPANFLATN
Sbjct: 98  PAWQEHPYFAFQAAAYQLNSRFLLALADAVQGSEKVRHKLRFAVQQMIDAMSPANFLATN 157

Query: 122 PEAQQKIIETHGESLTRGIAQLFADLQKGRVSQTDETAFEVGKDVATTAGSVVFENELFQ 181
           P AQQKI+ET GESLT+GIAQL ADLQKG VSQTDETAFEVG+DV  + GSV+FENELFQ
Sbjct: 158 PVAQQKILETRGESLTKGIAQLLADLQKGHVSQTDETAFEVGRDVGASEGSVIFENELFQ 217

Query: 182 LIQYAPLTKTVHARPLLIVPPCINKFYILDLQPQNSLVRYTVEQGNTVFLVSWRNADASM 241
           LIQY PLTKTVH  PLLIVPPCINKFYILDLQP NSLVRYTVEQG+TVFL+SWRNADA++
Sbjct: 218 LIQYKPLTKTVHEVPLLIVPPCINKFYILDLQPHNSLVRYTVEQGHTVFLISWRNADAAV 277

Query: 242 ETATWDQYVDDAVVRAI 258
           ETATWDQYVDDAVVR+I
Sbjct: 278 ETATWDQYVDDAVVRSI 294


>gi|300311720|ref|YP_003775812.1| poly-beta-hydroxyalkanoate
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 590

 Score =  150 bits (379), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 87/218 (39%), Positives = 121/218 (55%), Gaps = 11/218 (5%)

Query: 54  VTDRRMSAPAWQSNPFFAFHAAAYQLNARFLTSMVDAVQSTDKVKQKL-RFAVQQMIDAL 112
           V DRR S P WQ  PF  +H + + L  ++  +    V   +K    L  FA +Q +D  
Sbjct: 100 VADRRFSNPDWQRWPFNLWHQS-FLLAEQWWAAATRDVWGVEKHHADLVAFAARQCLDVF 158

Query: 113 SPANFLATNPEAQQKIIETHGESLTRGIAQLFADLQKGRVSQTDETA--FEVGKDVATTA 170
           SP+N L TNPE  +  +E  G +L  G+     D+    + +   TA  F  G+DVA + 
Sbjct: 159 SPSNQLLTNPEVLRITMEQRGANLLMGMQNCMNDMIGLLLEKPASTARTFMPGRDVAVSP 218

Query: 171 GSVVFENELFQLIQYAPLTKTVHARPLLIVPPCINKFYILDLQPQNSLVRYTVEQGNTVF 230
           G VV  N + +LI+YAP T+TV   PLL++P  I K+YILDL P NSL+RY VE+G+TVF
Sbjct: 219 GKVVLRNRIMELIRYAPATETVCPEPLLLIPAWIMKYYILDLSPANSLIRYLVEKGHTVF 278

Query: 231 LVSWRNADASMETATWDQYVD-------DAVVRAIPDK 261
            VSW+N   +    + D Y+D       DAV  A PD+
Sbjct: 279 CVSWKNPAPADRDLSMDDYLDSGFHAALDAVNSACPDR 316


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.130    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 798,023
Number of extensions: 29396
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 2
Length of query: 289
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 205
Effective length of database: 1,222,130
Effective search space: 250536650
Effective search space used: 250536650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)