BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0168.0056.p
         (52 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310191|ref|YP_003774283.1| undecaprenyl-phosphate-4-amino-...    87   2e-19

>gi|300310191|ref|YP_003774283.1|
           undecaprenyl-phosphate-4-amino-L-arabinose--lipid A
           4-amino-L-arabinosyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 574

 Score = 87.4 bits (215), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/48 (77%), Positives = 42/48 (87%)

Query: 2   RCDFLLLQDSIDNQNAEQMLRQYEGRWQLLWEGRRPSDRDERFRLYRR 49
           RCD+LLLQD I NQ+A  MLRQY G W+++WEGRRPSDRDERFRLYRR
Sbjct: 524 RCDYLLLQDDISNQDAALMLRQYPGAWRMVWEGRRPSDRDERFRLYRR 571


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.142    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 157,267
Number of extensions: 4276
Number of successful extensions: 17
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 52
Length of database: 1,619,870
Length adjustment: 25
Effective length of query: 27
Effective length of database: 1,501,495
Effective search space: 40540365
Effective search space used: 40540365
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 123 (52.0 bits)