BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0168.0055.p
         (159 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310190|ref|YP_003774282.1| Na+-driven multidrug efflux pum...   170   5e-44

>gi|300310190|ref|YP_003774282.1| Na+-driven multidrug efflux pump
           protein [Herbaspirillum seropedicae SmR1]
          Length = 454

 Score =  170 bits (430), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 109/151 (72%), Positives = 126/151 (83%)

Query: 1   VAQAIGARDWQTAKKISRAGIRLSAILSVLIGVAVWFAREQIIRAYTPDEVIIASALPLF 60
           VAQAIG  ++  AKKI  AGIRL+  LSVL+G+ V+  R QIIRAYTPD +II +ALPLF
Sbjct: 298 VAQAIGGGNFAVAKKIGNAGIRLAIALSVLVGLVVYCLRGQIIRAYTPDPLIIGAALPLF 357

Query: 61  LFIAFYQLFDSLQVTTAFVLRAYKVAVIPTVIYAVALWGIGLGGGYVLGLDPFGVSPAWL 120
           L+IAFYQLFDSLQVTTAFVLRAYKVAV+PTVIYAV LWG+GLGGGY+LGLDP G++P  L
Sbjct: 358 LYIAFYQLFDSLQVTTAFVLRAYKVAVVPTVIYAVTLWGVGLGGGYLLGLDPLGLTPPNL 417

Query: 121 HGAAGFWLGNSASLGLVAFFLIWYLRVVQRR 151
            G AGFWL NSASLGLV   L++YLR +QRR
Sbjct: 418 LGPAGFWLANSASLGLVGIGLLYYLRHIQRR 448


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.331    0.143    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 409,189
Number of extensions: 13200
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,250,540
Effective search space: 101293740
Effective search space used: 101293740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 127 (53.5 bits)