BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0168.0053.p (145 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310189|ref|YP_003774281.1| transmembrane protein [Herbaspi... 211 1e-56 gi|300312904|ref|YP_003776996.1| diguanylate cyclase/phosphodies... 117 4e-28 gi|300312606|ref|YP_003776698.1| EAL domain transmembrane protei... 112 8e-27 gi|300311036|ref|YP_003775128.1| signal transduction protein [He... 110 4e-26 gi|300312093|ref|YP_003776185.1| hypothetical protein Hsero_2782... 101 2e-23 >gi|300310189|ref|YP_003774281.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 706 Score = 211 bits (538), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 96/127 (75%), Positives = 117/127 (92%) Query: 17 IFSGAQKTKLLRKIVGRTNDKLLHFATHDVLTGLPNRALLAERIQHAIHVSKRSGLSFAV 76 + SG Q+ ++L++IVGRTNDKLLHFATHDVLTGLPNRALLA+RIQHA+ V++R+G +FAV Sbjct: 237 VISGVQRNQVLKRIVGRTNDKLLHFATHDVLTGLPNRALLADRIQHAVEVARRNGKTFAV 296 Query: 77 LFMDLDGFKAINDSLGHSVGDGLLIAVGQRIRACIRSEDMVSRIGGDEFVAVMGSLASPD 136 LFMDLDGFKAINDSLGH+VGDGLL+AV QRIR C+R EDMV+RIGGDEFV V+G+L+SPD Sbjct: 297 LFMDLDGFKAINDSLGHAVGDGLLVAVAQRIRQCLRGEDMVARIGGDEFVVVVGNLSSPD 356 Query: 137 VVENLAD 143 VVE L++ Sbjct: 357 VVEQLSE 363 >gi|300312904|ref|YP_003776996.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor domains protein [Herbaspirillum seropedicae SmR1] Length = 701 Score = 117 bits (292), Expect = 4e-28, Method: Composition-based stats. Identities = 55/93 (59%), Positives = 69/93 (74%) Query: 37 KLLHFATHDVLTGLPNRALLAERIQHAIHVSKRSGLSFAVLFMDLDGFKAINDSLGHSVG 96 ++ H ATHD LTGLPNR +L E +Q A+ V+++ G AV F+DLD FK INDSLGH VG Sbjct: 261 EMRHQATHDALTGLPNRNMLHEHLQRALRVARQKGALTAVAFVDLDQFKFINDSLGHQVG 320 Query: 97 DGLLIAVGQRIRACIRSEDMVSRIGGDEFVAVM 129 D LL V QR++AC+R DMV+R GGDEFV V+ Sbjct: 321 DELLKTVAQRLQACLREADMVARQGGDEFVLVL 353 >gi|300312606|ref|YP_003776698.1| EAL domain transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 695 Score = 112 bits (281), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 59/126 (46%), Positives = 81/126 (64%), Gaps = 5/126 (3%) Query: 23 KTKLLRKIVGRTNDKLLHFATHDVLTGLPNRALLAERIQHAIHVSKRSGLSFAVLFMDLD 82 +T L + + N++L HD LT LPNR LL +R+ AI+ + R FA++FMDLD Sbjct: 247 RTAKLARSLAAANEELTQMVLHDQLTRLPNRTLLEDRLNQAINKAAREQGHFALMFMDLD 306 Query: 83 GFKAINDSLGHSVGDGLLIAVGQRIRACIRSEDMVSRIGGDEFVAVMGSLASPD----VV 138 GFKAINDSLGH VGD LL+ V QR+ + R+ D V+R+GGDEFV ++ L +P+ V Sbjct: 307 GFKAINDSLGHHVGDRLLVEVAQRLTSSSRANDTVARLGGDEFV-ILVDLNTPEDAMGVA 365 Query: 139 ENLADC 144 E L + Sbjct: 366 EKLVEA 371 >gi|300311036|ref|YP_003775128.1| signal transduction protein [Herbaspirillum seropedicae SmR1] Length = 750 Score = 110 bits (276), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 52/107 (48%), Positives = 72/107 (67%) Query: 37 KLLHFATHDVLTGLPNRALLAERIQHAIHVSKRSGLSFAVLFMDLDGFKAINDSLGHSVG 96 KL H A +D L+GLPNR LL + +Q + +K+ AV+F+DLD FK +NDSLGHSVG Sbjct: 308 KLRHQANYDPLSGLPNRRLLGDMLQREVASAKKHAYPLAVVFIDLDRFKDVNDSLGHSVG 367 Query: 97 DGLLIAVGQRIRACIRSEDMVSRIGGDEFVAVMGSLASPDVVENLAD 143 D LL+ QR+RA +R D+V+R+ GDEFVAV+ L + + + D Sbjct: 368 DQLLVVAAQRVRASVREHDLVARLAGDEFVAVLPRLEASAALTRIGD 414 >gi|300312093|ref|YP_003776185.1| hypothetical protein Hsero_2782 [Herbaspirillum seropedicae SmR1] Length = 601 Score = 101 bits (251), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 50/99 (50%), Positives = 67/99 (67%) Query: 37 KLLHFATHDVLTGLPNRALLAERIQHAIHVSKRSGLSFAVLFMDLDGFKAINDSLGHSVG 96 +L H A HDVLTGLPNR +LAER+Q A+ + R +LF+DLDGFK IND+LGH G Sbjct: 405 ELQHQAHHDVLTGLPNRMMLAERMQAALTHACRERNGVGLLFLDLDGFKPINDTLGHKAG 464 Query: 97 DGLLIAVGQRIRACIRSEDMVSRIGGDEFVAVMGSLASP 135 D +L + +R+R R D ++R+GGDEFV ++ L P Sbjct: 465 DQVLQEITRRLRQVARHGDTLARVGGDEFVLLVTDLRLP 503 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.325 0.140 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 434,297 Number of extensions: 17520 Number of successful extensions: 127 Number of sequences better than 1.0e-08: 39 Number of HSP's gapped: 114 Number of HSP's successfully gapped: 39 Length of query: 145 Length of database: 1,619,870 Length adjustment: 77 Effective length of query: 68 Effective length of database: 1,255,275 Effective search space: 85358700 Effective search space used: 85358700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 126 (53.1 bits)