BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0168.0043.p
         (265 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310183|ref|YP_003774275.1| site specific integrase/recombi...   448   e-127
gi|300313582|ref|YP_003777674.1| site-specific integrase/recombi...   131   7e-32

>gi|300310183|ref|YP_003774275.1| site specific
           integrase/recombinase [Herbaspirillum seropedicae SmR1]
          Length = 307

 Score =  448 bits (1152), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 220/265 (83%), Positives = 236/265 (89%)

Query: 1   MTLFAHWLQTERRKDLLATHADDLSAYFAARHADTKASSANRRLAVLKRFFLLALRQNRI 60
           MT +AHWL  ER K L  T A+DL+AYFAARH  TK SS+NRRLAVLKRFF LALRQ+ +
Sbjct: 43  MTRYAHWLYQERAKALYETQAEDLNAYFAARHDQTKPSSSNRRLAVLKRFFQLALRQHHV 102

Query: 61  SEDPCLHLRSAKQPPRFPKVLSEGQVEALLAAPDVSTPLGLRDRTMLELMYASGLRVSEL 120
           + DPCL LRSA+QP RFPK LSEGQVEALLAAPDVSTPLGLRDR M+ELMYASGLRVSEL
Sbjct: 103 AADPCLKLRSARQPQRFPKTLSEGQVEALLAAPDVSTPLGLRDRAMIELMYASGLRVSEL 162

Query: 121 VLLKSVEVGMNEGVLRITGKGNKTRLVPFGEEARGWIERYLREARLQILEGQVDDALFVT 180
           VLLKS+EVGMNEGVLR+TGKG+KTRLVPFGEEA  W+ RYL EAR QIL+GQVDDALFVT
Sbjct: 163 VLLKSIEVGMNEGVLRVTGKGSKTRLVPFGEEAGSWLMRYLAEARAQILQGQVDDALFVT 222

Query: 181 ARGGAMTRQMFWTLIKKYALQGDIRAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADI 240
           ARGG MTRQMFWTLIKKYALQ  + A LSPHTLRHAFATHLLNHGADLRVVQLLLGHADI
Sbjct: 223 ARGGPMTRQMFWTLIKKYALQAGVTARLSPHTLRHAFATHLLNHGADLRVVQLLLGHADI 282

Query: 241 STTQIYTHVARERLKKLHAEHHPRG 265
           STTQIYTHVARERLK+LHA HHPRG
Sbjct: 283 STTQIYTHVARERLKQLHAAHHPRG 307


>gi|300313582|ref|YP_003777674.1| site-specific
           integrase/recombinase [Herbaspirillum seropedicae SmR1]
          Length = 330

 Score =  131 bits (329), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 85/246 (34%), Positives = 134/246 (54%), Gaps = 17/246 (6%)

Query: 36  KASSANRRLAVLKRFFLLALRQNRISEDPCLHLRSAKQPPRFPKVLSEGQVEALLAAPD- 94
            A S  R+L+  + FF     Q  ++ +P   +++ K+    PK L+      L++ PD 
Sbjct: 78  NARSIARKLSAWRGFFGWLSMQMDLAANPVDGVKAPKKSKPLPKALAADDAIRLVSQPDP 137

Query: 95  VSTP---LGLRDRTMLELMYASGLRVSELVLLKSVEV-----------GMNEGVLRITGK 140
           V  P   L   +R M EL+Y+SGLRVSELV +   +V            + E  + +TGK
Sbjct: 138 VRDPDSTLAACNRAMFELLYSSGLRVSELVGIDVADVREGGYESAGWVDLEEAEVTVTGK 197

Query: 141 GNKTRLVPFGEEARGWIERYLR-EARLQILEGQVDD-ALFVTARGGAMTRQMFWTLIKKY 198
           G K R VP G+ AR  +  +L   ARL+  +G  D  ALF+  RG  ++ ++    +K +
Sbjct: 198 GGKKRKVPVGQAARAALADWLPLRARLRKADGGPDSHALFLNERGARISPRVAQLRLKAH 257

Query: 199 ALQGDIRAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKKLH 258
               ++ + + PH LRH+FA+H+L    DLR VQ +LGHA I+ TQ+YT +  +RL +++
Sbjct: 258 GRALEMASDVHPHMLRHSFASHVLQSSGDLRAVQEMLGHASITATQVYTALDFQRLAQVY 317

Query: 259 AEHHPR 264
            + HPR
Sbjct: 318 DQAHPR 323


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 795,357
Number of extensions: 30223
Number of successful extensions: 107
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 2
Length of query: 265
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 181
Effective length of database: 1,222,130
Effective search space: 221205530
Effective search space used: 221205530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 129 (54.3 bits)