BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0168.0042.p
         (159 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310182|ref|YP_003774274.1| methylated-DNA-protein-cysteine...   140   6e-35

>gi|300310182|ref|YP_003774274.1| methylated-DNA-protein-cysteine
           S-methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 178

 Score =  140 bits (352), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 66/108 (61%), Positives = 81/108 (75%)

Query: 9   IFSAIVHVPFGGIGIRTSAGVILEMVYLPRHFREKDAIDAAADKAAKQILRYIDKPDYRF 68
           +FSA+VH PFGG+G+RT AG ++EMVYLP H+ EKDA DA A +A +QI  Y+  P YRF
Sbjct: 22  LFSAVVHTPFGGMGVRTEAGALVEMVYLPPHYAEKDATDAVAAQAVQQITHYLADPAYRF 81

Query: 69  KLPLAEVGSDFQRRVWDAIASIPRGEVRTYGQIAKFIQSAPRARARAA 116
            LP   VGS FQ+RVW AI +IP G+V TYGQ+AK IQSAPRA  +A 
Sbjct: 82  DLPRLSVGSAFQQRVWQAIMAIPCGQVLTYGQVAKRIQSAPRAVGQAC 129


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.134    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 398,482
Number of extensions: 10359
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,250,540
Effective search space: 101293740
Effective search space used: 101293740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)