BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0168.0032.p
         (82 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310176|ref|YP_003774268.1| C4-dicarboxylate transport tran...   140   2e-35
gi|300313791|ref|YP_003777883.1| response regulator protein [Her...    66   7e-13
gi|300310669|ref|YP_003774761.1| two component response regulato...    58   1e-10
gi|300313031|ref|YP_003777123.1| two component response regulato...    54   2e-09

>gi|300310176|ref|YP_003774268.1| C4-dicarboxylate transport
           transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 196

 Score =  140 bits (353), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 71/82 (86%), Positives = 76/82 (92%)

Query: 1   MDRVLEALQASREAGEQDAVRTRLEALSSREREVLDLILAGKMNKIIADELGISMRTVEV 60
           MDRVLEAL +SR  G +DAV++RL ALS REREVLDLILAGKMNK+IADELGISMRTVEV
Sbjct: 115 MDRVLEALASSRAGGAEDAVQSRLAALSVREREVLDLILAGKMNKVIADELGISMRTVEV 174

Query: 61  HRAHIFDKMNVKTAVELARLLK 82
           HRAHIFDKMNVKTAVELARLLK
Sbjct: 175 HRAHIFDKMNVKTAVELARLLK 196


>gi|300313791|ref|YP_003777883.1| response regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 206

 Score = 65.9 bits (159), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 43/64 (67%)

Query: 16  EQDAVRTRLEALSSREREVLDLILAGKMNKIIADELGISMRTVEVHRAHIFDKMNVKTAV 75
           E  A  +RLE L+ REREVL+L + G +NK IA ELGIS  TV+VH+  + DKM  KT  
Sbjct: 130 EHAACTSRLETLTPREREVLELAIGGLLNKQIATELGISEITVKVHKRRVMDKMQTKTLA 189

Query: 76  ELAR 79
           +L R
Sbjct: 190 DLVR 193


>gi|300310669|ref|YP_003774761.1| two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 214

 Score = 58.2 bits (139), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 45/60 (75%)

Query: 20  VRTRLEALSSREREVLDLILAGKMNKIIADELGISMRTVEVHRAHIFDKMNVKTAVELAR 79
           ++ RL+ L++RERE+L+ ++ G+ +K+IA EL IS++TV+VHRA + DK+  ++   L R
Sbjct: 138 LKARLKTLTAREREILEKVIMGQSSKLIARELNISVKTVDVHRASVKDKLGCQSTATLVR 197


>gi|300313031|ref|YP_003777123.1| two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 195

 Score = 53.9 bits (128), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 37/57 (64%)

Query: 21  RTRLEALSSREREVLDLILAGKMNKIIADELGISMRTVEVHRAHIFDKMNVKTAVEL 77
           + RL  L+ REREVL L++ G++NK IA ELG S RTV+ HR  +  KM   +  EL
Sbjct: 132 QARLATLTRREREVLMLLVKGRLNKQIAAELGTSERTVKAHRQQVMRKMYAGSLAEL 188


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.132    0.336 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 193,793
Number of extensions: 5766
Number of successful extensions: 39
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 4
Length of query: 82
Length of database: 1,619,870
Length adjustment: 53
Effective length of query: 29
Effective length of database: 1,368,915
Effective search space: 39698535
Effective search space used: 39698535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)