BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0168.0030.p
         (480 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310103|ref|YP_003774195.1| hypothetical protein Hsero_0768...   207   2e-54

>gi|300310103|ref|YP_003774195.1| hypothetical protein Hsero_0768
           [Herbaspirillum seropedicae SmR1]
          Length = 720

 Score =  207 bits (526), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 154/468 (32%), Positives = 228/468 (48%), Gaps = 71/468 (15%)

Query: 15  CQKMVKIGLFFDGTSNNKYRDEPNQA--------HTNIVKLFNAHKEDARGLGNLEQRGC 66
           C+  +  GLFFDGT NN    E  Q         H+N+ +LF+A+ +D          G 
Sbjct: 41  CKGQLFTGLFFDGTGNNDKWVEDGQTKNQRQRNKHSNVARLFDAYIDDP-------DNGF 93

Query: 67  YRFYIPGVGTRFPE-NQEWKETQE--GKAMGKGGQARILFAILQVYNAVHRAFNENRALF 123
           +R Y+ GVGT F E    +K   +  G   G  G  RI + I  + NAV+ ++    +LF
Sbjct: 94  FRVYMQGVGTPFAEIGDTFKLGTDIGGSGFGYMGADRINWGITSLLNAVY-SYATGGSLF 152

Query: 124 SDAQLTAKLKSYTRDVENN-------------------YDKEYPQHERRRRWFTELRDEL 164
           S  +    +   +  +  N                   Y    P+  RR   +     +L
Sbjct: 153 SGNEQRDLVNLMSMQMLQNGNVNAMPPDWQIGEWTVPGYLTTAPEKVRRLAMYKTFMQKL 212

Query: 165 NDRLQAQRDIIIQPRIPKIRVAVFGFSRGAIEARSFCYWLHAALEEKS---TLAGMPIEI 221
              +++ +  ++Q     I V+VFGFSRGA EAR+ C+WLH           LAG+PI I
Sbjct: 213 ATAVKSSQRKVVQ-----INVSVFGFSRGAAEARACCHWLHELFTPSGGAFELAGIPIRI 267

Query: 222 NFLGLFDSVASVGLPHSAAKTTPFRFIDGHFSWAAETLTPLPSLVKQTVHYIAAHEQRMN 281
            FLG+FD+VA+VG+       TP  F  GH +WA +T + +P  V+Q  H++A HEQR +
Sbjct: 268 GFLGVFDTVAAVGI----GDVTPVTF--GHMAWADKTQS-VPPAVEQCAHFVALHEQRAS 320

Query: 282 FPVTRVQGNNVQEVLYPGVHSDVGGGYCPKEQGRGM-TVGQM--VSQVPLLHMHKIARLA 338
           FP+    G     V YPG+HSD+GGGY P EQG+ M + G+   +SQ+PL+ MH  A  A
Sbjct: 321 FPLESSTGWT--NVGYPGMHSDIGGGYFPGEQGKSMPSWGKSPHLSQIPLIDMHFTALKA 378

Query: 339 GVPLVTYHRMASD--LQADYALSPELATNWNAYMAAGDFAGTYESQVREHMQMYYRFRYH 396
           GVPL T   + +D  L A YA  P L  ++N ++A     G     +RE+ + + R    
Sbjct: 379 GVPLWTTGEINADPSLSASYATDPRLIKSYNDWLATN---GIKAGSIREYTEAHTRQYLR 435

Query: 397 WSGRMAQLPACQRATPQEQQDMISYE--DLFKGDMEL------LRERA 436
           W G + +         +  QD  + +  D+ + D+EL       RERA
Sbjct: 436 WRGSLHEGKGGLMLGKRFYQDAGTSDKKDMLEADVELGKMIRDWRERA 483


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,485,407
Number of extensions: 62973
Number of successful extensions: 156
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 391
Effective length of database: 1,198,455
Effective search space: 468595905
Effective search space used: 468595905
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)