BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0168.0026.p
         (357 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310174|ref|YP_003774266.1| ferredoxin [4Fe-4S]-type protei...   590   e-170

>gi|300310174|ref|YP_003774266.1| ferredoxin [4Fe-4S]-type protein
           [Herbaspirillum seropedicae SmR1]
          Length = 347

 Score =  590 bits (1521), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 284/344 (82%), Positives = 308/344 (89%), Gaps = 5/344 (1%)

Query: 18  LGFADLRIADVDLSHREAGFQAWLDKGYHGEMDYMASHGMKRARPAELVPGTVRVITVRM 77
           +GFAD+RIADVDLSHREAGFQAWLDKGYHGEMDYMASHG+KRARPAELVPGTVRV++VRM
Sbjct: 1   MGFADVRIADVDLSHREAGFQAWLDKGYHGEMDYMASHGLKRARPAELVPGTVRVVSVRM 60

Query: 78  PYLPRATAP---DWREREEGRGADGSAAVVSLYARGRDYHKVLRARLQQLAGRIEKEIGA 134
           PYLP+A+ P   DWR REE R AD   A VS+YARGRDYHKVLRARLQQLA RIE  IG 
Sbjct: 61  PYLPKASGPAEPDWRAREEARSADPGGAQVSIYARGRDYHKVLRARLQQLATRIEGRIGP 120

Query: 135 FGYRVFTDSAPVMEVALAEKSGLGWRGKHTLLLNREAGSMFFLGELFTDLALPVDAPVTP 194
           FGYRVFTDSAPVMEVALAEK+GLGWRGKHTLLL+REAGSMFFLGE+ TDL LPVD PVTP
Sbjct: 121 FGYRVFTDSAPVMEVALAEKAGLGWRGKHTLLLHREAGSMFFLGEMLTDLPLPVDDPVTP 180

Query: 195 HCGQCSSCIDVCPTQAIVAPYELDARRCISYLTIELKGSIPVELRSLIGNRVYGCDDCQL 254
           HCGQCS+CI  CPT AIVAPYELDARRCISYLTIELKGSIP ELR LIGNR+YGCDDCQL
Sbjct: 181 HCGQCSACITACPTGAIVAPYELDARRCISYLTIELKGSIPSELRPLIGNRIYGCDDCQL 240

Query: 255 YCPWNKFAQTSTLPDFDARHGLGSASLIGLLNWSEDDFNRNTEGSAIRRIGHERWLRNMA 314
           YCPWNKFAQ ++LPDFD RHGL SASL+GL  WSE++F +NTEGSAIRRIGHERWLRN+A
Sbjct: 241 YCPWNKFAQRASLPDFDVRHGLDSASLVGLFGWSEEEFLKNTEGSAIRRIGHERWLRNLA 300

Query: 315 VGLGNA--AATHKGDAEIVAALQARLEHPSELVREHVAWALAQH 356
           VGLGNA  AA+H+GDA IVAAL+ARL HPS LV EHV WALA+H
Sbjct: 301 VGLGNAADAASHRGDAAIVAALRARLAHPSALVVEHVQWALARH 344


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,239,486
Number of extensions: 54933
Number of successful extensions: 159
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 271
Effective length of database: 1,212,660
Effective search space: 328630860
Effective search space used: 328630860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)