BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0168.0023.p
         (290 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310172|ref|YP_003774264.1| N-acetylmuramoyl-l-alanine amid...   380   e-107

>gi|300310172|ref|YP_003774264.1| N-acetylmuramoyl-l-alanine amidase
           [Herbaspirillum seropedicae SmR1]
          Length = 453

 Score =  380 bits (976), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/253 (78%), Positives = 216/253 (85%), Gaps = 17/253 (6%)

Query: 1   MPRSTEIRSKSVTSKTRRTILKAGGTLLVSVLTPLPALASQILAVRVWPSDDYTRVTLEN 60
           MPRS EIRSK V SK+RRTILKAGG L VSV+TPLPALASQILAVRVWPSDDYTRVTLEN
Sbjct: 1   MPRSPEIRSKPVKSKSRRTILKAGGALFVSVITPLPALASQILAVRVWPSDDYTRVTLEN 60

Query: 61  DSNLKVTHFIVKNPERLVVDIEGIDLNSTLKDLVAKIQPNDPYIKQVRVGQNRPSVVRLV 120
           DS+LKVTHF+VKNPERLVVDIEGIDLNSTLKDLVAKIQPNDPYIKQVRVGQNRPSVVRLV
Sbjct: 61  DSDLKVTHFVVKNPERLVVDIEGIDLNSTLKDLVAKIQPNDPYIKQVRVGQNRPSVVRLV 120

Query: 121 FDLKDEIKPQVFTLEPVGEYKYRFVIDLYPANPPDPIAALIQKGNWPKDQQTEIKPPLAE 180
           FDLKDEIKPQVFTL PVGEYKYRFVIDLYPANPPDPIAALIQKG+W  ++++   PPLA+
Sbjct: 121 FDLKDEIKPQVFTLAPVGEYKYRFVIDLYPANPPDPIAALIQKGDW--NKESPANPPLAQ 178

Query: 181 A-----KPDP------KAAPQLQDEDPPFAAKAKPQDDTKLQLTRMITIALDPGHGGEDP 229
                 KPDP      K  P+ ++E  P   K  P D+ ++QLTRMITIALDPGHGGEDP
Sbjct: 179 GPVTPPKPDPAPLAEIKPQPEDKNERNP---KVVP-DEPRMQLTRMITIALDPGHGGEDP 234

Query: 230 GAIGSRGNREKXV 242
           GA G+RGNREK V
Sbjct: 235 GATGARGNREKDV 247


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 914,064
Number of extensions: 37672
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 206
Effective length of database: 1,222,130
Effective search space: 251758780
Effective search space used: 251758780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)