BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0168.0021.p
         (165 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310171|ref|YP_003774263.1| DedA DSG-1 transmembrane protei...   256   4e-70
gi|300312735|ref|YP_003776827.1| DedA transmembrane protein [Her...   145   1e-36

>gi|300310171|ref|YP_003774263.1| DedA DSG-1 transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 220

 Score =  256 bits (655), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 123/157 (78%), Positives = 138/157 (87%)

Query: 9   FCATGAMNIWLLMFLLVVAAVTGNTLNYWIGSAIGHRVFTHNYRWLNPAALAKTHAFYEK 68
           FCATGAM+IWLLM LLVVAAV GNTLNYWIG  +G RV+THNYRWLNP AL KTHAFYEK
Sbjct: 60  FCATGAMDIWLLMTLLVVAAVAGNTLNYWIGGWVGQRVYTHNYRWLNPEALRKTHAFYEK 119

Query: 69  HGGKTIILARFTPIVRTFAPFIAGVSEMTFIRFQLFNIIGALLWVVGLLAFGYLFGNLPW 128
           HGGKTI++ARFTPIVRTFAPFIAGVS M+F RFQLFN++GA LWVVGL+  GYLFGN+P 
Sbjct: 120 HGGKTIVIARFTPIVRTFAPFIAGVSAMSFARFQLFNVLGAFLWVVGLVVLGYLFGNIPV 179

Query: 129 VRQNLNTLVLIGIVAAILPIVLGALWQFYRKFFSRRQ 165
           V+QNLNTLVLIGIVAA+ PIVLG LWQ +RK   +R+
Sbjct: 180 VQQNLNTLVLIGIVAAVFPIVLGGLWQIWRKLRGKRK 216


>gi|300312735|ref|YP_003776827.1| DedA transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 213

 Score =  145 bits (367), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 71/139 (51%), Positives = 97/139 (69%), Gaps = 1/139 (0%)

Query: 10  CATGAMNIWLLMFLLVVAAVTGNTLNYWIGSAIGHRVFTH-NYRWLNPAALAKTHAFYEK 68
            ATGA +I L++  L+VAA+ G++ NY IG  +G +VF   N R      L KTHAF+EK
Sbjct: 62  AATGAYDINLMVLTLIVAAILGDSTNYQIGKMLGIKVFDKPNSRIFKKEYLDKTHAFFEK 121

Query: 69  HGGKTIILARFTPIVRTFAPFIAGVSEMTFIRFQLFNIIGALLWVVGLLAFGYLFGNLPW 128
           HGGK II+ARF PIVRTFAPF+AGV  MT+ RF L+N++G + WV      GY FGN+P 
Sbjct: 122 HGGKAIIIARFAPIVRTFAPFVAGVGAMTYTRFFLYNVVGGIAWVASFAYAGYFFGNMPI 181

Query: 129 VRQNLNTLVLIGIVAAILP 147
           V++NL+ L++  ++ +ILP
Sbjct: 182 VKKNLSLLIVAIVILSILP 200


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.334    0.146    0.484 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 582,333
Number of extensions: 24631
Number of successful extensions: 142
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 2
Length of query: 165
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 87
Effective length of database: 1,250,540
Effective search space: 108796980
Effective search space used: 108796980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 127 (53.5 bits)