BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0168.0019.p
         (240 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312948|ref|YP_003777040.1| bifunctional diaminohydroxyphos...   261   5e-71
gi|300311527|ref|YP_003775619.1| cytosine/adenosine deaminases p...    56   2e-09

>gi|300312948|ref|YP_003777040.1| bifunctional
           diaminohydroxyphosphoribosyl aminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Herbaspirillum seropedicae SmR1]
          Length = 354

 Score =  261 bits (666), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 141/262 (53%), Positives = 168/262 (64%), Gaps = 65/262 (24%)

Query: 15  MALALQQAEQGMFTTTPNPRVGCVIVRDGRIIGAGFTQPPGGNHAEIQAMDDARQRGNDV 74
           MALAL QA  GM  TTPNPRVGCVIV+D RIIGAGFTQPPGGNHAEIQAM DA  RG+DV
Sbjct: 1   MALALIQAGFGMLDTTPNPRVGCVIVKDQRIIGAGFTQPPGGNHAEIQAMADAAARGHDV 60

Query: 75  RGATVYVTLEPCSHFGRTPPCADALIKAGVGKVVSAMTDPNPLVAGKGLEKL-------- 126
           RGATVYVTLEPCSHFGRTPPCADALI+AGV +VV+A+ DPNP+VAG+GL +L        
Sbjct: 61  RGATVYVTLEPCSHFGRTPPCADALIRAGVARVVAAIADPNPMVAGQGLARLQAAGIEVS 120

Query: 127 -----------------------PFARARACAILTG------------------------ 139
                                  P+ R ++ A L G                        
Sbjct: 121 CGLLEEEARDINIGFLHRMRTGRPWVRMKSAASLDGKTALHNGVSQWITGQAARDDGHIW 180

Query: 140 ----------IGTVKDDNPQLSVRAVDTPRQPRRIVVDSNLRLSPDANILAGGGTWVFTA 189
                     IGT++ D+ QL+VRA++TPRQPRRIV+DS L +SP+A ++ GG TWVFTA
Sbjct: 181 RARACAIMAGIGTIQKDDAQLTVRAIETPRQPRRIVIDSKLIVSPEARVIQGGNTWVFTA 240

Query: 190 SEDRARIAALEERGAEVIVLPN 211
           ++DR + AALE  GAEVI+L N
Sbjct: 241 TDDRDKRAALEAEGAEVILLAN 262


>gi|300311527|ref|YP_003775619.1| cytosine/adenosine deaminases
           protein [Herbaspirillum seropedicae SmR1]
          Length = 185

 Score = 56.2 bits (134), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 59/121 (48%), Gaps = 14/121 (11%)

Query: 9   ENDQQAMALALQQAEQGMFTTTPNPRVGCVIVRDGRIIGAGFTQPPGGN----HAEIQAM 64
           E D   M  AL+QA    +     P VG V+V+DG +I  GF QP G +    HAEI A+
Sbjct: 16  EADLLHMRAALEQARHA-WALGEVP-VGAVVVKDGVVIATGFNQPIGKHDPTAHAEIMAL 73

Query: 65  DDARQRGNDVR--GATVYVTLEPCSHFGRTPPCADALIKAGVGKVVSAMTDPNPLVAGKG 122
             A +   + R  G  +YVTLEPC        C+ A++ A + +VV    DP     G  
Sbjct: 74  RRAAEILGNYRLPGCELYVTLEPCV------MCSGAMMHARLARVVFGAADPKTGACGSV 127

Query: 123 L 123
           L
Sbjct: 128 L 128


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 793,867
Number of extensions: 34407
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 3
Length of query: 240
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,226,865
Effective search space: 192617805
Effective search space used: 192617805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)