BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0168.0014.p
         (176 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312944|ref|YP_003777036.1| Tfp pilus assembly transmembran...    73   1e-14

>gi|300312944|ref|YP_003777036.1| Tfp pilus assembly transmembrane
           PilW protein [Herbaspirillum seropedicae SmR1]
          Length = 294

 Score = 73.2 bits (178), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 69/127 (54%), Gaps = 13/127 (10%)

Query: 15  ALEPGIFGIDNAR---VDEHSSGFSSRSANRDAHGSDLLAIRFFGSGPRNRPDNDMLNCA 71
           AL  G+ G+D++R   + + ++G    S     H SDLL +  FG+ P +R    + NC+
Sbjct: 83  ALAAGLRGVDDSRQAELHDPATGQFGGSTGDGLHHSDLLMLGLFGAAPASR--AQVGNCS 140

Query: 72  GFAVP-GPDSATALSDFETMRGQSIFYVAPDGTNEPELRCKYLARDGGWSAAAIVRGVES 130
           G   P GP         E+ R   I+Y+A   + EPELRC+Y  R G W++ AI RGVE+
Sbjct: 141 GAPAPTGPLE-------ESARHWMIYYIAAGSSGEPELRCRYQGRHGVWTSDAIARGVEA 193

Query: 131 FQVLYGL 137
            Q+ Y +
Sbjct: 194 MQLRYAI 200


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 633,665
Number of extensions: 26850
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,245,805
Effective search space: 120843085
Effective search space used: 120843085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)