BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0168.0009.p
         (212 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312942|ref|YP_003777034.1| hypothetical protein Hsero_3648...   207   8e-55

>gi|300312942|ref|YP_003777034.1| hypothetical protein Hsero_3648
           [Herbaspirillum seropedicae SmR1]
          Length = 205

 Score =  207 bits (526), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 114/182 (62%), Positives = 132/182 (72%), Gaps = 3/182 (1%)

Query: 31  VAGRQSGLWWGKDPAVDQTIKARFETSLLAARDNKLDDWADTPAGLLALILLLDQFPRNI 90
           VA RQ  LWW K+P  D   + RFE  +  A  N+L DWADTP  LLAL+LLLDQ PRNI
Sbjct: 27  VAERQKALWWSKNPETDALCRTRFEPLVQDAAANRLSDWADTPRSLLALVLLLDQLPRNI 86

Query: 91  YRDSATAFDFDELARQCCHLGLAQGYDQQLPPLQRVFFYLPLEHSEDIEDQEYCVQLFRA 150
           YRD+  AF FDELARQC HL LA G +Q+LP + RVF YLPLEHSEDI+DQ Y VQL  A
Sbjct: 87  YRDTPQAFAFDELARQCTHLALAMGVEQELPAIARVFLYLPLEHSEDIDDQHYVVQLMGA 146

Query: 151 LAKQIAKEDPASAETFNGYLKFADRHHAIVARFGRFPHRNAILGRASTAEETAFLKEPYS 210
           LAK    ED  +   F+GY  +A RH A++ RFGRFPHRN ILGRAS+AEE+AFLK+P S
Sbjct: 147 LAKAAQGEDKPA---FDGYADYARRHLAVIERFGRFPHRNRILGRASSAEESAFLKQPGS 203

Query: 211 SF 212
           SF
Sbjct: 204 SF 205


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 569,078
Number of extensions: 20794
Number of successful extensions: 53
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 131
Effective length of database: 1,236,335
Effective search space: 161959885
Effective search space used: 161959885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)