BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0168.0004.p
         (272 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312929|ref|YP_003777021.1| membrane protein [Herbaspirillu...   377   e-106

>gi|300312929|ref|YP_003777021.1| membrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 294

 Score =  377 bits (967), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/238 (79%), Positives = 208/238 (87%), Gaps = 6/238 (2%)

Query: 1   MKWEGNRESDNVEDRRGEDSGGGGGGGFSFGGGRSIGLGGIVVALVASYFLGVNPLTVIN 60
           MKWEGNRESDNVE    +  G  GGGG    GGRSIGLG + VALVASYFLG+NPLT+++
Sbjct: 1   MKWEGNRESDNVE----DRRGEDGGGGGFGFGGRSIGLGTVAVALVASYFLGINPLTMLS 56

Query: 61  MLSGGGGQLAPVQQSAPAHKPPPNDQMARFVSTVLADTEDTWGEIFKAGGATYVRPKLVL 120
           +LSGG    APVQQ APAHKP PNDQMARFV+TVLADTEDTW +IF A G  YVRPKLVL
Sbjct: 57  LLSGGSP--APVQQQAPAHKPSPNDQMARFVATVLADTEDTWDKIFAANGKQYVRPKLVL 114

Query: 121 FSGSTPTACGTGQTATGPFYCPGDQKVYIDLSFYQLMKQRFNVSGNFAQAYVIAHEVGHH 180
           FSGSTPTACGTGQ+ATGPFYCPGDQKVYIDLSFY+LMKQRF VSGNFAQAYVIAHEVGHH
Sbjct: 115 FSGSTPTACGTGQSATGPFYCPGDQKVYIDLSFYELMKQRFKVSGNFAQAYVIAHEVGHH 174

Query: 181 VQNLLGISGKVDKARRNMSEKQSNALSVKLELQADCFAGVWAYHANEARHIIENGDIE 238
           VQ+L+GIS KVD ARRN +EKQ+NA+SV+LELQADCFAGVWAYHAN+ARHI+E GDIE
Sbjct: 175 VQHLMGISDKVDAARRNATEKQANAMSVRLELQADCFAGVWAYHANQARHILEEGDIE 232


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 807,338
Number of extensions: 32028
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 188
Effective length of database: 1,222,130
Effective search space: 229760440
Effective search space used: 229760440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)