BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0167.0004.p
         (160 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311079|ref|YP_003775171.1| N-acyl-D-glutamate deacylase [H...   287   3e-79
gi|300309905|ref|YP_003773997.1| N-acyl-D-glutamate deacylase [H...   149   1e-37
gi|300309903|ref|YP_003773995.1| N-acyl-D-glutamate deacylase [H...    68   3e-13

>gi|300311079|ref|YP_003775171.1| N-acyl-D-glutamate deacylase
           [Herbaspirillum seropedicae SmR1]
          Length = 496

 Score =  287 bits (734), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 136/157 (86%), Positives = 149/157 (94%)

Query: 2   IDAAGKVLSPGFIDVHTHDDTNVIRMPEMFPKLSQGVTTVVVGNCGISASPVTLKGDPPD 61
           IDA+G+VLSPGFIDVHTHDDTNVIR PEMFPKLSQGVTTVVVGNCGISA+PVTLKG+PPD
Sbjct: 58  IDASGRVLSPGFIDVHTHDDTNVIRTPEMFPKLSQGVTTVVVGNCGISAAPVTLKGEPPD 117

Query: 62  PMNLLGQSTAFSYPTFASYVAAINAAQPSVNVAALVGHTALRSNHMDRLDRAASSAEIAG 121
           PMNLLG+  AF YP+FASYV A+NAA+P++NVAALVGHTALR+NHMDRLDRAA+ +EIAG
Sbjct: 118 PMNLLGKREAFHYPSFASYVEAVNAARPAINVAALVGHTALRNNHMDRLDRAATESEIAG 177

Query: 122 MRDQLTEALEHGALGLSTGLAYGNAINAPTEEVLALA 158
           MR QL EALEHGALGLSTGLAYGNAINAPTEEVLALA
Sbjct: 178 MRAQLREALEHGALGLSTGLAYGNAINAPTEEVLALA 214


>gi|300309905|ref|YP_003773997.1| N-acyl-D-glutamate deacylase
           [Herbaspirillum seropedicae SmR1]
          Length = 498

 Score =  149 bits (376), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 77/154 (50%), Positives = 104/154 (67%)

Query: 2   IDAAGKVLSPGFIDVHTHDDTNVIRMPEMFPKLSQGVTTVVVGNCGISASPVTLKGDPPD 61
           IDA+GK+++PGFID HTHDD  V+  P+M  K+SQGVTTV+ GNCGIS +P+      P 
Sbjct: 51  IDASGKIVAPGFIDSHTHDDQAVLSQPDMTFKISQGVTTVITGNCGISIAPLRAGTPLPA 110

Query: 62  PMNLLGQSTAFSYPTFASYVAAINAAQPSVNVAALVGHTALRSNHMDRLDRAASSAEIAG 121
           P++LL  +    + TF+SY+ A+     +VNVAA+VGH+ LR   MD L+R A   EI+ 
Sbjct: 111 PLSLLDDADGTRFETFSSYLDALRQTPSAVNVAAMVGHSTLRVMTMDALEREARPDEISA 170

Query: 122 MRDQLTEALEHGALGLSTGLAYGNAINAPTEEVL 155
           M   L EALE GA+G+STG  Y  A +A T+EV+
Sbjct: 171 MNALLDEALEAGAIGISTGTYYPPAAHASTQEVI 204


>gi|300309903|ref|YP_003773995.1| N-acyl-D-glutamate deacylase
           [Herbaspirillum seropedicae SmR1]
          Length = 550

 Score = 68.2 bits (165), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 75/162 (46%), Gaps = 28/162 (17%)

Query: 1   VIDAAGKVLSPGFIDVHTHDD----TNVIRMPEMFPKLSQGVTTVVVGNCGISASPVTLK 56
           VIDA G +++PGFID HTH D    T+ I+  ++   L+QGVTT V+GN G  +  V   
Sbjct: 93  VIDARGAIVAPGFIDAHTHADRDMFTDDIKKRQVDYFLTQGVTTAVIGNDGGGSYEV--- 149

Query: 57  GDPPDPMNLLGQSTAFSYPTFASYVAAINAAQPSVNVAALVGHTALRSNHMDRLDRAASS 116
                                A   A ++      N A  VG   +R + +   D+    
Sbjct: 150 ---------------------AQQAAWLSRHGIGPNAAMYVGFGPIRRSQLGEADQQPDQ 188

Query: 117 AEIAGMRDQLTEALEHGALGLSTGLAYGNAINAPTEEVLALA 158
            ++  M+  + + +  GA+G STGL Y     A T EV+ALA
Sbjct: 189 KQLEAMKALVAKGMCEGAIGFSTGLFYAPQNFASTGEVIALA 230


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.130    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 523,857
Number of extensions: 20302
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 3
Length of query: 160
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,250,540
Effective search space: 102544280
Effective search space used: 102544280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)