BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0167.0003.p
         (156 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311079|ref|YP_003775171.1| N-acyl-D-glutamate deacylase [H...   263   4e-72
gi|300309905|ref|YP_003773997.1| N-acyl-D-glutamate deacylase [H...   166   9e-43
gi|300309903|ref|YP_003773995.1| N-acyl-D-glutamate deacylase [H...    54   8e-09

>gi|300311079|ref|YP_003775171.1| N-acyl-D-glutamate deacylase
           [Herbaspirillum seropedicae SmR1]
          Length = 496

 Score =  263 bits (673), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 123/145 (84%), Positives = 132/145 (91%)

Query: 1   MPAGAVYHCMADDDVNRILSHPATVIGSDGLPNDPLPHPRLWGAFPRVLGYYSREQQLFP 60
           MPAGAVYHCM+DDDVNRILSHPATV+GSDGLPNDPLPHPRLWGAFPRVLGYYSREQ+LF 
Sbjct: 345 MPAGAVYHCMSDDDVNRILSHPATVVGSDGLPNDPLPHPRLWGAFPRVLGYYSREQKLFS 404

Query: 61  LAAAVRKMTGLSAQRFGLHERGLVKVGYWADLVLFDAATIRDAATFTDPMQPAHGIDAVW 120
           LA AV KMTGLSAQRFGL  RG V+VGY ADLVLFDA T+RDAA+FTDPMQPAHGI+AVW
Sbjct: 405 LATAVHKMTGLSAQRFGLDLRGFVRVGYHADLVLFDAETVRDAASFTDPMQPAHGIEAVW 464

Query: 121 VNGVLSYRGESKAATGVRAGRFLAR 145
           VNG L+YRG+ K AT  RAGRFLAR
Sbjct: 465 VNGELAYRGQDKKATAARAGRFLAR 489


>gi|300309905|ref|YP_003773997.1| N-acyl-D-glutamate deacylase
           [Herbaspirillum seropedicae SmR1]
          Length = 498

 Score =  166 bits (420), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 83/146 (56%), Positives = 106/146 (72%), Gaps = 4/146 (2%)

Query: 2   PAGAVYHCMADDDVNRILSHPATVIGSDGLPNDPLPHPRLWGAFPRVLGYYSREQQLFPL 61
           PA AVY  M + DV  IL+   T+IGSDG+P    PHPRLWG FPR+LG+YSR+  LF L
Sbjct: 339 PASAVYFGMDESDVRNILAFDETMIGSDGIPTGEKPHPRLWGTFPRILGHYSRDLGLFDL 398

Query: 62  AAAVRKMTGLSAQRFGLHERGLVKVGYWADLVLFDAATIRDAATFTDPMQPAHGIDAVWV 121
             AV KMTGL+A+ F LHERG ++VG++AD+V+FDAATIRD A++  P +PA GIDAV V
Sbjct: 399 EVAVWKMTGLTARNFKLHERGTLEVGHYADIVVFDAATIRDTASYETPAEPAQGIDAVIV 458

Query: 122 NGVLSYR-GESKAATGVRAGRFLARQ 146
           NGV+++R G+     G RAG  +AR 
Sbjct: 459 NGVVTWRLGQH---MGARAGHVIARH 481


>gi|300309903|ref|YP_003773995.1| N-acyl-D-glutamate deacylase
           [Herbaspirillum seropedicae SmR1]
          Length = 550

 Score = 53.5 bits (127), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 4/115 (3%)

Query: 11  ADDDVNRILSHPATVIGSDGLPNDPLPHPRLWGAFPRVLGYYSREQQLFPLAAAVRKMTG 70
           ++ DV   +  P  +  SD        HPR   +F      Y R Q    LA  +R  T 
Sbjct: 412 SNKDVVAFMKRPWVMTSSDSFHG----HPRTVASFAEKYHEYVRNQHTITLAQFIRSSTS 467

Query: 71  LSAQRFGLHERGLVKVGYWADLVLFDAATIRDAATFTDPMQPAHGIDAVWVNGVL 125
             A   G+  RG ++ G++AD+V+FD       AT+ +  + + G+ A  VNG L
Sbjct: 468 YPADALGIARRGRLQPGHFADVVVFDPIAYAPRATYVNNEERSVGVVATVVNGEL 522


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 548,990
Number of extensions: 23657
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 3
Length of query: 156
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,250,540
Effective search space: 97542120
Effective search space used: 97542120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)