BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0166.0001.p
         (195 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309852|ref|YP_003773944.1| SAM-dependent methyltransferase...   243   7e-66
gi|300310113|ref|YP_003774205.1| SAM-dependent methyltransferase...   119   1e-28

>gi|300309852|ref|YP_003773944.1| SAM-dependent methyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 525

 Score =  243 bits (620), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 122/181 (67%), Positives = 143/181 (79%), Gaps = 2/181 (1%)

Query: 4   NWTDGYVTDIGYTHGYYPQLNPARLQLALAAAGLDSPLVRTACELGFGQGLSINIHAAAS 63
           NW DGYV DI YT+GYYP +NPARL LA A  GL +P V+TACELGFGQGLS NIHAAAS
Sbjct: 3   NWNDGYVVDIAYTYGYYPGMNPARLPLAFAFHGLQAPAVQTACELGFGQGLSSNIHAAAS 62

Query: 64  PVSWYGNDFNPVQAGHAQTLAQASRNGAQLEPASFAEFCTREDLPQFDFIAMHGIWSWVS 123
              W+GNDFNP QA  AQ LA AS +GAQLE +SF+ FC R+DLP FDFIA+HGIWSWVS
Sbjct: 63  TTRWWGNDFNPRQAAFAQELAAASGSGAQLEDSSFSRFCRRDDLPDFDFIALHGIWSWVS 122

Query: 124 AENRALIRDFVERRLKLGGVLYVSYNTQPGWAAFMPLRDLLLRHFDMPSNAGKG--SAER 181
            ENR +I DF++R+LK GGVLY+SYNTQPGW+AFMPLR+LL++H     N  +G  +A R
Sbjct: 123 QENRDIIFDFIDRKLKPGGVLYISYNTQPGWSAFMPLRELLVQHTQQSGNEEQGLPTAAR 182

Query: 182 I 182
           I
Sbjct: 183 I 183


>gi|300310113|ref|YP_003774205.1| SAM-dependent methyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 523

 Score =  119 bits (299), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/172 (43%), Positives = 102/172 (59%), Gaps = 9/172 (5%)

Query: 4   NWTDGYVTDIGYTHGYYPQLNPARLQLALAAAGLDS-PLVR--TACELGFGQGLSINIHA 60
            W+ GYV  I Y  G++P+ +P  L  A  A G++  PL R  T  ELG GQGL+  + A
Sbjct: 2   QWSSGYVHGIDYPVGFFPEQSPVHLSFACLAQGVEPVPLDREFTYMELGCGQGLTSTVLA 61

Query: 61  AASPVS-WYGNDFNPVQAGHAQTLAQAS--RNGAQLEPASFAEFCTRE-DLPQFDFIAMH 116
           AA+P   +Y  DF P Q   AQ +A A+   N   LE  SF +    E DLP FDF+ M+
Sbjct: 62  AANPQGRFYAVDFLPTQVRTAQDMASAAGIDNLTVLE-CSFEQMARGEIDLPAFDFVTMY 120

Query: 117 GIWSWVSAENRALIRDFVERRLKLGGVLYVSYNTQPGWAAFMPLRDLLLRHF 168
           G++SWV   NR  I DF+ R LK GG++Y++YN  PGW++ + L+  +LR F
Sbjct: 121 GVYSWVDRTNRGHILDFLRRYLKPGGIVYLNYNALPGWSSALSLQR-MLREF 171


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 646,792
Number of extensions: 24911
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 2
Length of query: 195
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 115
Effective length of database: 1,241,070
Effective search space: 142723050
Effective search space used: 142723050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)