BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0165.0087.p
         (266 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311128|ref|YP_003775220.1| outer membrane protein [Herbasp...   206   1e-54

>gi|300311128|ref|YP_003775220.1| outer membrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 547

 Score =  206 bits (525), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 111/167 (66%), Positives = 124/167 (74%), Gaps = 14/167 (8%)

Query: 109 KAALGQLGPTLDVRTQKGREYSSPAXAGG--DQT--------LVTDRRLMLVLTMNLLNG 158
           K+A  +  PTL V   + +       AGG  D T        L TDRRLMLV+TMNLLNG
Sbjct: 368 KSARAKFSPTLAVEFTQTKTRG----AGGAIDTTNPTANSLQLSTDRRLMLVMTMNLLNG 423

Query: 159 GSDAYYQSQIGAKLVEKSNTAADLERKLKEQVEINYRTLEAVKKRMNISRDIYENNANVA 218
           GSD YY  Q GAK VEKSNT  DLERKL+EQ+EINYRTL AV+KRM+ISR  Y  NANVA
Sbjct: 424 GSDVYYSKQAGAKYVEKSNTVLDLERKLREQIEINYRTLGAVRKRMDISRQAYLTNANVA 483

Query: 219 DVFLEQLSTGSKQLLDVLDAYQQAYQTRMDFALLLFQQADISYQILR 265
           DVFL+QLS GSKQL+DVLDAYQQAYQ R+DF+ LLFQQADISYQILR
Sbjct: 484 DVFLDQLSAGSKQLIDVLDAYQQAYQARVDFSNLLFQQADISYQILR 530



 Score =  119 bits (297), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/137 (52%), Positives = 90/137 (65%), Gaps = 14/137 (10%)

Query: 1   LDVPPQMRVNPERDENAAS--RQASVNGASDAAARADAAAASNDEILALLRQSDSGFTGN 58
           LD PPQ+R+  +    A    +  ++ G S       A  +  DEIL LLRQ+D  F+GN
Sbjct: 52  LDSPPQIRLGADPGGAAVGDFKLPALPGES-------AMGSPQDEILQLLRQADPEFSGN 104

Query: 59  AIDLPYVNSETVGDEQVPF--LTLDQVIELALNNSYSYAATSALADQAGYAAKAALGQLG 116
           AI LP +   +V  E  P   LTL QV++LA+NNSYSYAATSA ADQA YAA+A  GQ+G
Sbjct: 105 AIVLPQI---SVVPEGAPVNDLTLSQVLDLAVNNSYSYAATSAQADQARYAARATAGQMG 161

Query: 117 PTLDVRTQKGREYSSPA 133
           PTLDVR QKG+EYSSP+
Sbjct: 162 PTLDVRAQKGQEYSSPS 178


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.128    0.338 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 678,154
Number of extensions: 23828
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 2
Length of query: 266
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 182
Effective length of database: 1,222,130
Effective search space: 222427660
Effective search space used: 222427660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 130 (54.7 bits)