BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0165.0085.p
         (480 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311127|ref|YP_003775219.1| HSP90 family high temperature m...   484   e-138

>gi|300311127|ref|YP_003775219.1| HSP90 family high temperature
           molecular chaperone G protein [Herbaspirillum
           seropedicae SmR1]
          Length = 636

 Score =  484 bits (1246), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 233/267 (87%), Positives = 250/267 (93%)

Query: 57  SRDVKAIREGSTKRVLSLLEELANSDDQAQKDKYAGFWNEFGQVLKEGIGEDAANKERIA 116
           SRDV+AIR+GS KRVLSLLEELANSD+QAQKDKY+ FW EFGQVLKEG+GEDAANKERIA
Sbjct: 347 SRDVRAIRDGSAKRVLSLLEELANSDEQAQKDKYSTFWTEFGQVLKEGVGEDAANKERIA 406

Query: 117 KLLRFASTHGDSDAQTTSFADYIGRMKEGQDKIYYVTGENFHAAKNSPHLEIFRKKGVEV 176
           KLLRFASTH DSD Q  S ADY+GRMKEGQDKIYYVT E + AAKNSPHLEIFRKKGVEV
Sbjct: 407 KLLRFASTHNDSDVQNVSLADYVGRMKEGQDKIYYVTAETWQAAKNSPHLEIFRKKGVEV 466

Query: 177 LLLTDRVDEWMLSFLQDFDGKELASVAKGGLDLGKLENEAEKKQHEETETQFKDLVEKMK 236
           LLLTDRVDEWMLSFL DFDGKELASVAKGGLDLGKLENE EKKQHEET+ ++KDLVEKMK
Sbjct: 467 LLLTDRVDEWMLSFLTDFDGKELASVAKGGLDLGKLENEDEKKQHEETQAEYKDLVEKMK 526

Query: 237 TSLGDKAKDVRVTFRLTDSPACLVADENELSGNLLRMLKAAGQDAPEAKPILEINPDHPL 296
           T+L DKAK+VRVTFRLTDSPACLVADENELSGNL+RMLKAAGQ APE+KP LEINPDHPL
Sbjct: 527 TALADKAKEVRVTFRLTDSPACLVADENELSGNLVRMLKAAGQAAPESKPTLEINPDHPL 586

Query: 297 VQRLKYEDAKFDDWSHILFDQALLAEG 323
           VQRLKYE+A+FDDWSHIL+DQALLAEG
Sbjct: 587 VQRLKYEEARFDDWSHILYDQALLAEG 613



 Score = 88.6 bits (218), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 39/45 (86%), Positives = 42/45 (93%)

Query: 13  TVLKDELETVNQASALWTRSKSDITPEQYEEFYKHISHDFGXPFS 57
           TV KDELETVNQASALWTRSKS+ITPEQYEEFYKH+SHDFG P +
Sbjct: 223 TVQKDELETVNQASALWTRSKSEITPEQYEEFYKHVSHDFGAPLA 267


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,553,628
Number of extensions: 70795
Number of successful extensions: 191
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 2
Length of query: 480
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 391
Effective length of database: 1,198,455
Effective search space: 468595905
Effective search space used: 468595905
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)