BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0165.0081.p (121 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311122|ref|YP_003775214.1| short-chain dehydrogenase [Herb... 182 9e-48 gi|300312612|ref|YP_003776704.1| 3-ketoacyl-CoA reductase [Herba... 76 6e-16 gi|300313037|ref|YP_003777129.1| short-chain dehydrogenase [Herb... 72 1e-14 gi|300312302|ref|YP_003776394.1| acetoacetyl-CoA reductase [Herb... 69 9e-14 gi|300310595|ref|YP_003774687.1| 3-oxoacyl-(acyl-carrier protein... 65 2e-12 >gi|300311122|ref|YP_003775214.1| short-chain dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 251 Score = 182 bits (461), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 89/92 (96%), Positives = 91/92 (98%) Query: 30 YAASKGAIDAFTIGLAKEVAAEGIRVNAIRPGLIYTDIHASGGEAGRVDRLKDAVPMKRG 89 YAASKGAIDAFTIGLAKEVAAEGIRVNA+RPGLIYTDIHASGGEAGRVDRLKDAVPMKRG Sbjct: 160 YAASKGAIDAFTIGLAKEVAAEGIRVNAVRPGLIYTDIHASGGEAGRVDRLKDAVPMKRG 219 Query: 90 GSAEEVANAILWLLSEEASYATGTFIDISGGR 121 GSA EVANAILWLLSEEASYATGTFID+SGGR Sbjct: 220 GSAAEVANAILWLLSEEASYATGTFIDVSGGR 251 >gi|300312612|ref|YP_003776704.1| 3-ketoacyl-CoA reductase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 76.3 bits (186), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 39/93 (41%), Positives = 57/93 (61%), Gaps = 1/93 (1%) Query: 30 YAASKGAIDAFTIGLAKEVAAEGIRVNAIRPGLIYTDIHASGGEAGRVDRLKDAVPMKRG 89 YAASKG + T G+AKE+ A+ IRVNA+ PG+I T +++ + +PM R Sbjct: 158 YAASKGFVSTLTRGMAKELLADKIRVNAVAPGVIMTPFQERFTTPEQLEGFRKTIPMGRI 217 Query: 90 GSAEEVANAILWLLSEEAS-YATGTFIDISGGR 121 G +E + A L+L SE+ S Y TG ID++GG+ Sbjct: 218 GEPDECSGAFLYLASEQMSGYVTGQIIDVNGGQ 250 >gi|300313037|ref|YP_003777129.1| short-chain dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 369 Score = 72.4 bits (176), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 40/91 (43%), Positives = 57/91 (62%) Query: 30 YAASKGAIDAFTIGLAKEVAAEGIRVNAIRPGLIYTDIHASGGEAGRVDRLKDAVPMKRG 89 YAA+KGAI AFT L++++A+ GI VNA+ PG I+T + + A V VP+ R Sbjct: 274 YAATKGAIVAFTRSLSQQLASAGIHVNAVAPGPIWTPLIPASFSAEEVASFGKNVPLGRP 333 Query: 90 GSAEEVANAILWLLSEEASYATGTFIDISGG 120 G +EVA A ++L +E ASY TG + +GG Sbjct: 334 GQPDEVAPAYVFLATEGASYMTGQVLHPNGG 364 >gi|300312302|ref|YP_003776394.1| acetoacetyl-CoA reductase [Herbaspirillum seropedicae SmR1] Length = 246 Score = 69.3 bits (168), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 61/107 (57%), Gaps = 3/107 (2%) Query: 15 IGAAVAQSAAARENXYAASKGAIDAFTIGLAKEVAAEGIRVNAIRPGLIYTD-IHASGGE 73 I + Q + Y+ +K I FT+ LA+EVA +G+ VN + PG I TD + A E Sbjct: 138 ISSVNGQKGQFGQTNYSTAKAGIHGFTMALAQEVATKGVTVNTVSPGYIGTDMVRAIRPE 197 Query: 74 AGRVDRLKDAVPMKRGGSAEEVANAILWLLSEEASYATGTFIDISGG 120 ++++ +P+KR G EE+A+ + W+ S E YATG+ ++GG Sbjct: 198 V--LEKIVSGIPVKRLGEPEEIASIVAWIASSEGGYATGSDFSLNGG 242 >gi|300310595|ref|YP_003774687.1| 3-oxoacyl-(acyl-carrier protein) reductase [Herbaspirillum seropedicae SmR1] Length = 250 Score = 64.7 bits (156), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 30 YAASKGAIDAFTIGLAKEVAAEGIRVNAIRPGLIYTDIHASGGEAGRVDRLKDAVPMKRG 89 Y+A+K + A T L KE A + I VNAI P T I +A +D + +P R Sbjct: 157 YSAAKAGMIALTKSLGKETATKNIAVNAITPAAAQTRILEQCTQA-HIDYMLSKIPRARF 215 Query: 90 GSAEEVANAILWLLSEEASYATGTFIDISGGR 121 EE+A + WL+SEE S+ T + D+SGGR Sbjct: 216 VKVEELAAMVAWLVSEENSFTTASVFDLSGGR 247 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.133 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 377,102 Number of extensions: 14013 Number of successful extensions: 148 Number of sequences better than 1.0e-08: 25 Number of HSP's gapped: 136 Number of HSP's successfully gapped: 25 Length of query: 121 Length of database: 1,619,870 Length adjustment: 74 Effective length of query: 47 Effective length of database: 1,269,480 Effective search space: 59665560 Effective search space used: 59665560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 125 (52.8 bits)