BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0165.0077.p
         (252 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311119|ref|YP_003775211.1| spermidine synthase [Herbaspiri...   393   e-111

>gi|300311119|ref|YP_003775211.1| spermidine synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 275

 Score =  393 bits (1010), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 188/238 (78%), Positives = 205/238 (86%)

Query: 1   MLIKRKSIEAQANTKAGPAPDKAKSKPKAAAPRKPRFAPVTLSEQEGVRYLHFGTEWVQG 60
           MLI+RKSIEAQANTKAGP   + + +  A+ PRK ++APVTLSE EGVRYLHFGTEWVQG
Sbjct: 1   MLIRRKSIEAQANTKAGPNRRRQQLEADASKPRKIKYAPVTLSELEGVRYLHFGTEWVQG 60

Query: 61  AMRIRKPDWIELEYAQQMMSWMLFNRAPQHIVQLGLGTAALTKFSYRQFPAANVTAVELN 120
           AMRIRKPDWIELEYAQQMM+WMLFNR P+HIVQLGLGT ALTKFSYRQFP A VTAVELN
Sbjct: 61  AMRIRKPDWIELEYAQQMMAWMLFNRDPRHIVQLGLGTGALTKFSYRQFPQAQVTAVELN 120

Query: 121 PSVIAICHSMFKLPPEDARLSLLEMDADDFIHDEQRHGTIDALQVDLYDATARGPMLDTP 180
           P+VI ICHSMFKLP  D RL +LE DA DFI     HG IDALQVDLYDATARGP+LDTP
Sbjct: 121 PAVITICHSMFKLPEPDERLMILESDAMDFIVHAASHGIIDALQVDLYDATARGPVLDTP 180

Query: 181 EFYKACRDSLSEDGVMTVNLFGDHPSYAKNLKAMRYAFDQVVSLPEVHDGNVVAIAXK 238
           EFY+AC DSL+  GVMTVNLFGDHPSYAKNL+AM +AFD VVSLPEVHDGNVVA+A K
Sbjct: 181 EFYQACYDSLAAGGVMTVNLFGDHPSYAKNLRAMEHAFDTVVSLPEVHDGNVVALAFK 238


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 682,175
Number of extensions: 25821
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 169
Effective length of database: 1,226,865
Effective search space: 207340185
Effective search space used: 207340185
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)