BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0165.0076.p
         (393 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311667|ref|YP_003775759.1| hypothetical protein Hsero_2352...   104   1e-23

>gi|300311667|ref|YP_003775759.1| hypothetical protein Hsero_2352
           [Herbaspirillum seropedicae SmR1]
          Length = 250

 Score =  104 bits (260), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/188 (35%), Positives = 101/188 (53%), Gaps = 25/188 (13%)

Query: 195 KTITLTXKMLQADCMLTLTYRENMDDFERLQADFKAFRARLRTLGEFHYVATVERQERGA 254
           K +    K + AD M+TLTYR+NM D +     +  FR R+    +F YVA +E QERGA
Sbjct: 48  KRVRQACKTIGADRMITLTYRQNMIDRDTALKHWGRFRRRMGKHRQFLYVAVIEEQERGA 107

Query: 255 LHIHIACQHFPAWLNNEHGTRVRSYNLIRSMWRRVVGRDNG-----NVDLTKPR----GR 305
           +H H+            HG   + Y+L+R +W +VVG+D       N+D+  P     G+
Sbjct: 108 IHFHV----------TVHGR--QRYHLLRGIWAQVVGKDGAGRSMSNIDVRNPPKFGFGK 155

Query: 306 NWAHKIASYISKYVSKNIEEARFNKKSYWSSRGIPKPKQTKLWFPMDTPIRDII---VLV 362
           +  HK+A+YI+KY +K++     N+K Y+  RGIPKP+ T  W    T   D +    L+
Sbjct: 156 DGVHKLAAYIAKYCTKDMPCRTLNQKRYFCFRGIPKPEVTA-WPLACTQAVDAVRTAFLI 214

Query: 363 AQEFVMKG 370
           A+   M+G
Sbjct: 215 AEGGCMEG 222


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,182,898
Number of extensions: 44916
Number of successful extensions: 145
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 306
Effective length of database: 1,207,925
Effective search space: 369625050
Effective search space used: 369625050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)